rglobi: R Interface to Global Biotic Interactions

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A programmatic interface to the web service methods provided by Global Biotic Interactions (GloBI). GloBI provides access to spatial-temporal species interaction records from sources all over the world. rglobi provides methods to search species interactions by location, interaction type, and taxonomic name. In addition, it supports Cypher, a graph query language, to allow for executing custom queries on the GloBI aggregate species interaction data set.

Author
Jorrit Poelen [aut, cre], Stephen Gosnell [aut], Sergey Slyusarev [aut]
Date of publication
2016-03-09 00:51:08
Maintainer
Jorrit Poelen <jhpoelen@xs4all.nl>
License
MIT + file LICENSE
Version
0.2.9
URLs

View on CRAN

Man pages

get_child_taxa
Returns all known child taxa with known interaction of...
get_data_fields
List data fields identified in GloBI database
get_interaction_areas
Find locations at which interactions were observed
get_interaction_matrix
Get Interaction Matrix. Constructs an interaction matrix...
get_interactions
Get Species Interaction from GloBI
get_interactions_by_taxa
Return interactions involving specific taxa
get_interactions_in_area
Return all interactions in specified area
get_interaction_table
Returns all known child taxa with known interaction of...
get_interaction_types
List interactions identified in GloBI database
get_predators_of
Get a List of Predators of a Given Prey Taxon
get_prey_of
Get a List of Prey for given Predator Taxon
query
Executes a Cypher Query Against GloBI's Neo4j Instance

Files in this package

rglobi
rglobi/inst
rglobi/inst/doc
rglobi/inst/doc/rglobi_vignette.html
rglobi/inst/doc/rglobi_vignette.Rmd
rglobi/tests
rglobi/tests/testthat.R
rglobi/tests/testthat
rglobi/tests/testthat/test-globi.R
rglobi/NAMESPACE
rglobi/NEWS
rglobi/R
rglobi/R/rglobi.R
rglobi/vignettes
rglobi/vignettes/rglobi_vignette.Rmd
rglobi/README.md
rglobi/MD5
rglobi/build
rglobi/build/vignette.rds
rglobi/DESCRIPTION
rglobi/man
rglobi/man/get_child_taxa.Rd
rglobi/man/get_interaction_matrix.Rd
rglobi/man/get_interaction_table.Rd
rglobi/man/get_interactions_by_taxa.Rd
rglobi/man/get_data_fields.Rd
rglobi/man/get_interactions.Rd
rglobi/man/get_interactions_in_area.Rd
rglobi/man/get_predators_of.Rd
rglobi/man/get_interaction_types.Rd
rglobi/man/query.Rd
rglobi/man/get_interaction_areas.Rd
rglobi/man/get_prey_of.Rd
rglobi/LICENSE