rglobi: R Interface to Global Biotic Interactions
Version 0.2.9

A programmatic interface to the web service methods provided by Global Biotic Interactions (GloBI). GloBI provides access to spatial-temporal species interaction records from sources all over the world. rglobi provides methods to search species interactions by location, interaction type, and taxonomic name. In addition, it supports Cypher, a graph query language, to allow for executing custom queries on the GloBI aggregate species interaction data set.

Browse man pages Browse package API and functions Browse package files

AuthorJorrit Poelen [aut, cre], Stephen Gosnell [aut], Sergey Slyusarev [aut]
Date of publication2016-03-09 00:51:08
MaintainerJorrit Poelen <jhpoelen@xs4all.nl>
LicenseMIT + file LICENSE
Version0.2.9
URL https://github.com/ropensci/rglobi
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rglobi")

Man pages

get_child_taxa: Returns all known child taxa with known interaction of...
get_data_fields: List data fields identified in GloBI database
get_interaction_areas: Find locations at which interactions were observed
get_interaction_matrix: Get Interaction Matrix. Constructs an interaction matrix...
get_interactions: Get Species Interaction from GloBI
get_interactions_by_taxa: Return interactions involving specific taxa
get_interactions_in_area: Return all interactions in specified area
get_interaction_table: Returns all known child taxa with known interaction of...
get_interaction_types: List interactions identified in GloBI database
get_predators_of: Get a List of Predators of a Given Prey Taxon
get_prey_of: Get a List of Prey for given Predator Taxon
query: Executes a Cypher Query Against GloBI's Neo4j Instance

Functions

ReportProgress Source code
add_missing_options Source code
create_bbox_param Source code
cypher_result_as_dataframe Source code
get_child_taxa Man page Source code
get_data_fields Man page Source code
get_globi_url Source code
get_interaction_areas Man page Source code
get_interaction_matrix Man page Source code
get_interaction_table Man page Source code
get_interaction_types Man page Source code
get_interactions Man page Source code
get_interactions_by_taxa Man page Source code
get_interactions_in_area Man page Source code
get_predators_of Man page Source code
get_prey_of Man page Source code
interaction_id_for_type Source code
query Man page Source code
read_csv Source code
rel_type_interaction_type Source code
unique_target_taxa_of_source_taxon Source code

Files

inst
inst/doc
inst/doc/rglobi_vignette.html
inst/doc/rglobi_vignette.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test-globi.R
NAMESPACE
NEWS
R
R/rglobi.R
vignettes
vignettes/rglobi_vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/get_child_taxa.Rd
man/get_interaction_matrix.Rd
man/get_interaction_table.Rd
man/get_interactions_by_taxa.Rd
man/get_data_fields.Rd
man/get_interactions.Rd
man/get_interactions_in_area.Rd
man/get_predators_of.Rd
man/get_interaction_types.Rd
man/query.Rd
man/get_interaction_areas.Rd
man/get_prey_of.Rd
LICENSE
rglobi documentation built on May 19, 2017, 4:49 p.m.