get_interaction_matrix: Get Interaction Matrix. Constructs an interaction matrix...

In rglobi: Interface to Global Biotic Interactions

Get Interaction Matrix. Constructs an interaction matrix indicating whether source taxa (rows) or target taxa (columns) are known to interact with given type.

Description

Get Interaction Matrix. Constructs an interaction matrix indicating whether source taxa (rows) or target taxa (columns) are known to interact with given type.

Usage

get_interaction_matrix(
  source.taxon.names = list("Homo sapiens"),
  target.taxon.names = list("Mammalia"),
  interaction.type = "eats",
  opts = list(),
  read_csv = read_csv_online
)

Arguments

source.taxon.names	list of source taxon names (e.g. list('Mammalia', 'Aves', 'Ariopsis felis'))
target.taxon.names	list of target taxon names
interaction.type	the preferred interaction type (e.g. preysOn)
opts	list of options to configure GloBI API
read_csv	function used to find csv associated to query url, defaulting to online query method

Value

matrix representing species interactions between source and target taxa

See Also

Other interactions: get_interaction_types(), get_interactions_by_taxa(), get_interactions_by_type(), get_interactions(), get_predators_of(), get_prey_of()

Examples

get_interaction_matrix("Homo sapiens", "Mammalia", "interactsWith")

rglobi documentation built on Oct. 6, 2023, 5:10 p.m.