overlapCoefficient: Overlap coefficient, also known as Szymkiewicz-Simpson...
In ribiosUtils: Utilities from and Interface to the Bioinfo-C (BIOS) Library
Description
Usage
Arguments
Value
See Also
Examples
Description
Overlap coefficient, also known as Szymkiewicz-Simpson coefficient
Usage
1
2
3
overlapCoefficient(x, y, checkUniqueNonNA = FALSE)
overlapDistance(x, y, checkUniqueNonNA = FALSE)
Arguments
x
A vector
y
A vector
checkUniqueNonNA
Logical, if TRUE, x and y are
made unique and non-NA
Value
The overlap coefficient
See Also
overlapCofficient calculates the overlap coefficient, and
overlapDistance is defined by 1-overlapCoefficient.
Examples
1
2
3
4
5
6
7
8
9
10
11
myX <- 1:6
myY <- 4:9
overlapCoefficient(myX, myY)
myY2 <- 4:10
overlapCoefficient(myX, myY2)
## compare the result with Jaccard Index
jaccardIndex(myX, myY2)
## overlapDistance
overlapDistance(myX, myY2)
ribiosUtils documentation built on March 13, 2020, 2:54 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
Overlap coefficient, also known as Szymkiewicz-Simpson coefficient
Usage
1 2 3 | overlapCoefficient(x, y, checkUniqueNonNA = FALSE)
overlapDistance(x, y, checkUniqueNonNA = FALSE)
|
Arguments
x |
A vector |
y |
A vector |
checkUniqueNonNA |
Logical, if |
Value
The overlap coefficient
See Also
overlapCofficient calculates the overlap coefficient, and
overlapDistance is defined by 1-overlapCoefficient.
Examples
1 2 3 4 5 6 7 8 9 10 11 | myX <- 1:6
myY <- 4:9
overlapCoefficient(myX, myY)
myY2 <- 4:10
overlapCoefficient(myX, myY2)
## compare the result with Jaccard Index
jaccardIndex(myX, myY2)
## overlapDistance
overlapDistance(myX, myY2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.