calcGeneVars: Calculate variance of gene expression across cells in an...
In rliger: Linked Inference of Genomic Experimental Relationships
calcGeneVars R Documentation
Calculate variance of gene expression across cells in an online fashion
Description
This function calculates the variance of gene expression values across cells for hdf5 files.
Usage
calcGeneVars(object, chunk = 1000, verbose = TRUE)
Arguments
object
liger object. The input raw.data should be a list of hdf5 files.
Should call normalize and selectGenes before calling.
chunk
size of chunks in hdf5 file. (default 1000)
verbose
Print progress bar/messages (TRUE by default)
Value
liger object with scale.data slot set.
rliger documentation built on Nov. 9, 2023, 1:07 a.m.
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| calcGeneVars | R Documentation |
Calculate variance of gene expression across cells in an online fashion
Description
This function calculates the variance of gene expression values across cells for hdf5 files.
Usage
calcGeneVars(object, chunk = 1000, verbose = TRUE)
Arguments
object |
|
chunk |
size of chunks in hdf5 file. (default 1000) |
verbose |
Print progress bar/messages (TRUE by default) |
Value
liger object with scale.data slot set.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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