convertOldLiger: Convert old liger object to latest version

In rliger: Linked Inference of Genomic Experimental Relationships

Convert old liger object to latest version

Description

Convert old liger object to latest version

Usage

convertOldLiger(
  object,
  dimredName,
  clusterName = "clusters",
  h5FilePath = NULL
)

Arguments

object	liger object from rliger version <1.99.0
dimredName	The name of variable in cellMeta slot to store the dimensionality reduction matrix, which originally located in tsne.coords slot. Default "tsne.coords".
clusterName	The name of variable in cellMeta slot to store the clustering assignment, which originally located in clusters slot. Default "clusters".
h5FilePath	Named list, to specify the path to the H5 file of each dataset if location has been changed. Default NULL looks at the file paths stored in object.

Examples

## Not run: 
# Suppose you have a liger object of old version (<1.99.0)
newLig <- convertOldLiger(oldLig)

## End(Not run)

rliger documentation built on Oct. 30, 2024, 1:07 a.m.