rnaseqWrapper: Wrapper for several R packages and scripts to automate RNA-seq analysis

This package is designed to streamline several of the common steps for RNA-seq analysis, including differential expression and variant discovery. For the development build, or to contribute changes to this package, please see our repository at https://bitbucket.org/petersmp/rnaseqwrapper/

Install the latest version of this package by entering the following in R:
install.packages("rnaseqWrapper")
AuthorMark Peterson
Date of publication2014-07-23 15:59:32
MaintainerMark Peterson <mark.phillip.peterson@gmail.com>
LicenseGPL
Version1.0-1

View on CRAN

Functions

calcBasicDE Man page
calcCombVals Man page
calcHornMatrix Man page
calcLogVal Man page
calculateThirdPosBias Man page
DESeqWrapper Man page
determineSynonymous Man page
fastaExample Man page
female_1.genes.results Man page
female_2.genes.results Man page
female_3.genes.results Man page
heatmap.mark Man page
kaksFromVariants Man page
male_1.genes.results Man page
male_2.genes.results Man page
male_3.genes.results Man page
mergeCountFiles Man page
nSynNonSites Man page
parseVarScan Man page
plotDE Man page
plotDispEsts Man page
readVariantFiles Man page
rnaseqWrapper Man page
rnaseqWrapper-package Man page
runGOAnalysis Man page
varScanExample Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.