Files in rnaseqWrapper

Wrapper for several R packages and scripts to automate RNA-seq analysis

MD5

DESCRIPTION

README.md

NAMESPACE

R/determineSynonymous.R R/calculateThirdPosBias.R R/nSynNonSites.R R/mergeCountFiles.R R/plotDE.R R/heatmap.mark.R R/DESeqWrapper.R R/calcBasicDE.R R/runGOAnalysis.R R/calcHornMatrix.R R/kaksFromVariants.R R/calcLogVal.R R/parseVarScan.R R/readVariantFiles.R R/plotDispEsts.R R/calcCombVals.R man/nSynNonSites.Rd man/determineSynonymous.Rd man/calculateThirdPosBias.Rd man/calcLogVal.Rd man/readVariantFiles.Rd man/calcHornMatrix.Rd man/countData.Rd man/calcBasicDE.Rd man/DESeqWrapper.Rd man/runGOAnalysis.Rd man/kaksFromVariants.Rd man/calcCombVals.Rd man/parseVarScan.Rd man/mergeCountFiles.Rd man/dataFile.Rd man/rnaseqWrapper-package.Rd man/heatmap.mark.Rd

data/female_1.genes.results.txt.gz

data/fastaExample.rda

data/male_3.genes.results.txt.gz

data/male_1.genes.results.txt.gz

data/male_2.genes.results.txt.gz

data/female_3.genes.results.txt.gz

data/female_2.genes.results.txt.gz

data/varScanExample.rda

data/datalist

rnaseqWrapper documentation built on May 2, 2019, 5:58 a.m.