Man pages for rnaseqWrapper
Wrapper for several R packages and scripts to automate RNA-seq analysis
| calcBasicDE | Calculate basics differential expression between pairs of... |
| calcCombVals | Calculate group values from RNAseq data |
| calcHornMatrix | Calculate a Horn distance matrix |
| calcLogVal | Calculate log value of RNAseq columns |
| calculateThirdPosBias | Calculate the third position bias of polymorphisms |
| countData | Expression data for use in examples for the rnaseqWrapper... |
| dataFile | Data for use in examples for the rnaseqWrapper package |
| DESeqWrapper | A wrapper for DESeq |
| determineSynonymous | Determine whether or not variants are synonomous |
| heatmap.mark | Enhanced Heat Map, further modified |
| kaksFromVariants | Calculate Ka/Ks ratios from a table of variants |
| mergeCountFiles | Merge multiple expression count data files for RNAseq |
| nSynNonSites | Calculate the number of (non) synonomous sites |
| parseVarScan | Parse a VarScan output |
| readVariantFiles | Read in variant files for RNAseq |
| rnaseqWrapper-package | A Wrapper for RNAseq analysis |
| runGOAnalysis | Run basic GO analysis |
