Files in rodeo
A Code Generator for ODE-Based Models

MD5
.Rinstignore
DESCRIPTION
README.md
NAMESPACE
inst/fortran/forcingsInclude.f95
inst/fortran/integrators.f95
inst/fortran/forcingsGenericMethods.f95
inst/doc/rodeoVignette.pdf inst/doc/rodeoVignette.R inst/doc/rodeoVignette.Rmd
inst/doc/vignetteData/fortran/functionsCode.f95
inst/doc/vignetteData/fortran/fortranForcingsTest.f95
inst/doc/vignetteData/fig/overview.odg
inst/doc/vignetteData/fig/overview.png
inst/doc/vignetteData/fig/reactor.png
inst/doc/vignetteData/fig/reactor.odg
inst/doc/examples/linked/waterSediment/xecute_multiObject.r
inst/doc/examples/linked/waterSediment/functions.f95
inst/doc/examples/linked/waterSediment/xecute_singleObject.r
inst/doc/examples/linked/waterSediment/multiObject/sed_funs.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_pros.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_stoi.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_vars.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_pars.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_pars.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_stoi.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_funs.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_vars.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_pros.txt
inst/doc/examples/linked/waterSediment/fig/system.png
inst/doc/examples/linked/waterSediment/fig/system.odp
inst/doc/examples/linked/waterSediment/singleObject/vars.txt
inst/doc/examples/linked/waterSediment/singleObject/pros.txt
inst/doc/examples/linked/waterSediment/singleObject/stoi.txt
inst/doc/examples/linked/waterSediment/singleObject/pars.txt
inst/doc/examples/linked/waterSediment/singleObject/funs.txt
inst/doc/examples/0D/twoZonesStirredTank/vars.txt
inst/doc/examples/0D/twoZonesStirredTank/pros.txt
inst/doc/examples/0D/twoZonesStirredTank/xecute.r
inst/doc/examples/0D/twoZonesStirredTank/stoi.txt
inst/doc/examples/0D/twoZonesStirredTank/pars.txt
inst/doc/examples/0D/twoZonesStirredTank/fig/system.odg
inst/doc/examples/0D/twoZonesStirredTank/fig/system.png
inst/doc/examples/0D/streeterPhelpsLike/vars.txt
inst/doc/examples/0D/streeterPhelpsLike/pros.txt
inst/doc/examples/0D/streeterPhelpsLike/xecute.r
inst/doc/examples/0D/streeterPhelpsLike/stoi.txt
inst/doc/examples/0D/streeterPhelpsLike/pars.txt
inst/doc/examples/0D/streeterPhelpsLike/funs.txt
inst/doc/examples/0D/streeterPhelpsLike/fig/system.png
inst/doc/examples/0D/streeterPhelpsLike/fig/system.odp
inst/doc/examples/1D/advectionDispersion/vars.txt
inst/doc/examples/1D/advectionDispersion/pros.txt
inst/doc/examples/1D/advectionDispersion/xecute.r
inst/doc/examples/1D/advectionDispersion/stoi.txt
inst/doc/examples/1D/advectionDispersion/pars.txt
inst/doc/examples/1D/advectionDispersion/functions.f95
inst/doc/examples/1D/advectionDispersion/funs.txt
inst/doc/examples/1D/advectionDispersion/fig/reach.png
inst/doc/examples/1D/advectionDispersion/fig/reach.odg
inst/doc/examples/1D/groundwater/vars.txt
inst/doc/examples/1D/groundwater/pros.txt
inst/doc/examples/1D/groundwater/xecute.r
inst/doc/examples/1D/groundwater/stoi.txt
inst/doc/examples/1D/groundwater/pars.txt
inst/doc/examples/1D/groundwater/functions.f95
inst/doc/examples/1D/groundwater/funs.txt
inst/doc/examples/1D/groundwater/fig/watershed.odg
inst/doc/examples/1D/groundwater/fig/watershed.png
inst/doc/examples/1D/diffusion/vars.txt
inst/doc/examples/1D/diffusion/pros.txt
inst/doc/examples/1D/diffusion/xecute.r
inst/doc/examples/1D/diffusion/stoi.txt
inst/doc/examples/1D/diffusion/pars.txt
inst/doc/examples/1D/diffusion/fig/diffusion.png
inst/doc/examples/1D/diffusion/fig/diffusion.odg
inst/doc/examples/1D/tetracycline/vars.txt
inst/doc/examples/1D/tetracycline/pros.txt
inst/doc/examples/1D/tetracycline/xecute.r
inst/doc/examples/1D/tetracycline/stoi.txt
inst/doc/examples/1D/tetracycline/pars.txt
inst/doc/examples/1D/tetracycline/functions.f95
inst/doc/examples/1D/tetracycline/funs.txt
inst/doc/examples/1D/tetracycline/fig/tanksInSeries.odg
inst/doc/examples/1D/tetracycline/fig/tanksInSeries.png
vignettes/references.bib
vignettes/preamble-latex.tex
vignettes/.install_extras
vignettes/rodeoVignette.Rmd
vignettes/vignetteData/fortran/functionsCode.f95
vignettes/vignetteData/fortran/fortranForcingsTest.f95
vignettes/vignetteData/fig/overview.odg
vignettes/vignetteData/fig/overview.png
vignettes/vignetteData/fig/reactor.png
vignettes/vignetteData/fig/reactor.odg
vignettes/examples/linked/waterSediment/xecute_multiObject.r
vignettes/examples/linked/waterSediment/functions.f95
vignettes/examples/linked/waterSediment/xecute_singleObject.r
vignettes/examples/linked/waterSediment/multiObject/sed_funs.txt
vignettes/examples/linked/waterSediment/multiObject/sed_pros.txt
vignettes/examples/linked/waterSediment/multiObject/sed_stoi.txt
vignettes/examples/linked/waterSediment/multiObject/wat_vars.txt
vignettes/examples/linked/waterSediment/multiObject/wat_pars.txt
vignettes/examples/linked/waterSediment/multiObject/sed_pars.txt
vignettes/examples/linked/waterSediment/multiObject/wat_stoi.txt
vignettes/examples/linked/waterSediment/multiObject/wat_funs.txt
vignettes/examples/linked/waterSediment/multiObject/sed_vars.txt
vignettes/examples/linked/waterSediment/multiObject/wat_pros.txt
vignettes/examples/linked/waterSediment/fig/system.png
vignettes/examples/linked/waterSediment/fig/system.odp
vignettes/examples/linked/waterSediment/singleObject/vars.txt
vignettes/examples/linked/waterSediment/singleObject/pros.txt
vignettes/examples/linked/waterSediment/singleObject/stoi.txt
vignettes/examples/linked/waterSediment/singleObject/pars.txt
vignettes/examples/linked/waterSediment/singleObject/funs.txt
vignettes/examples/0D/twoZonesStirredTank/vars.txt
vignettes/examples/0D/twoZonesStirredTank/pros.txt
vignettes/examples/0D/twoZonesStirredTank/xecute.r
vignettes/examples/0D/twoZonesStirredTank/stoi.txt
vignettes/examples/0D/twoZonesStirredTank/pars.txt
vignettes/examples/0D/twoZonesStirredTank/fig/system.odg
vignettes/examples/0D/twoZonesStirredTank/fig/system.png
vignettes/examples/0D/streeterPhelpsLike/vars.txt
vignettes/examples/0D/streeterPhelpsLike/pros.txt
vignettes/examples/0D/streeterPhelpsLike/xecute.r
vignettes/examples/0D/streeterPhelpsLike/stoi.txt
vignettes/examples/0D/streeterPhelpsLike/pars.txt
vignettes/examples/0D/streeterPhelpsLike/funs.txt
vignettes/examples/0D/streeterPhelpsLike/fig/system.png
vignettes/examples/0D/streeterPhelpsLike/fig/system.odp
vignettes/examples/1D/advectionDispersion/vars.txt
vignettes/examples/1D/advectionDispersion/pros.txt
vignettes/examples/1D/advectionDispersion/xecute.r
vignettes/examples/1D/advectionDispersion/stoi.txt
vignettes/examples/1D/advectionDispersion/pars.txt
vignettes/examples/1D/advectionDispersion/functions.f95
vignettes/examples/1D/advectionDispersion/funs.txt
vignettes/examples/1D/advectionDispersion/fig/reach.png
vignettes/examples/1D/advectionDispersion/fig/reach.odg
vignettes/examples/1D/groundwater/vars.txt
vignettes/examples/1D/groundwater/pros.txt
vignettes/examples/1D/groundwater/xecute.r
vignettes/examples/1D/groundwater/stoi.txt
vignettes/examples/1D/groundwater/pars.txt
vignettes/examples/1D/groundwater/functions.f95
vignettes/examples/1D/groundwater/funs.txt
vignettes/examples/1D/groundwater/fig/watershed.odg
vignettes/examples/1D/groundwater/fig/watershed.png
vignettes/examples/1D/diffusion/vars.txt
vignettes/examples/1D/diffusion/pros.txt
vignettes/examples/1D/diffusion/xecute.r
vignettes/examples/1D/diffusion/stoi.txt
vignettes/examples/1D/diffusion/pars.txt
vignettes/examples/1D/diffusion/fig/diffusion.png
vignettes/examples/1D/diffusion/fig/diffusion.odg
vignettes/examples/1D/tetracycline/vars.txt
vignettes/examples/1D/tetracycline/pros.txt
vignettes/examples/1D/tetracycline/xecute.r
vignettes/examples/1D/tetracycline/stoi.txt
vignettes/examples/1D/tetracycline/pars.txt
vignettes/examples/1D/tetracycline/functions.f95
vignettes/examples/1D/tetracycline/funs.txt
vignettes/examples/1D/tetracycline/fig/tanksInSeries.odg
vignettes/examples/1D/tetracycline/fig/tanksInSeries.png
R/classMethod_dynamics.r R/class.r R/classMethod_step.r R/classMethod_stoichiometry.r R/plainMethods_stoiBuild_stoiCheck.r R/plainMethod_exportDF.r R/classMethod_finalize.r R/classMethods_getTables.r R/classMethods_lib.r R/classMethod_plotStoichiometry.r R/classMethods_getValues.r R/classMethod_compile.r R/internal_constants.r R/internal_functions.r R/0_package.r R/classMethod_initialize.r R/classMethod_initStepper.r R/classMethods_setValues.r R/classMethod_generate.r R/plainMethod_forcingFunctions.r R/classMethod_getDim.r R/data.r man/pars.Rd man/libName.Rd man/stoi.Rd man/setVars.Rd man/stoiCheck.Rd man/pros.Rd man/vars.Rd man/dynamics.Rd man/compile.Rd man/step.Rd man/stoiCreate.Rd man/rodeo-package.Rd man/getPars.Rd man/libFunc.Rd man/stoichiometry.Rd man/getVars.Rd man/funs.Rd man/exportDF.Rd man/plotStoichiometry.Rd man/finalize.Rd man/setPars.Rd man/initialize.Rd man/generate.Rd man/rodeo-class.Rd man/forcingFunctions.Rd man/initStepper.Rd
build/vignette.rds
data/stoi.r data/pros.r data/vars.r data/pars.r data/funs.r
rodeo documentation built on May 1, 2019, 7:32 p.m.