Files in rodeo
A Code Generator for ODE-Based Models
.Rinstignore
MD5
README.md
NAMESPACE
DESCRIPTION
R/classMethod_compile.r
R/classMethods_getValues.r
R/classMethod_plotStoichiometry.r
R/data.r
R/classMethods_setValues.r
R/classMethod_initialize.r
R/classMethod_step.r
R/class.r
R/plainMethods_stoiBuild_stoiCheck.r
R/classMethod_generate.r
R/classMethod_dynamics.r
R/0_package.r
R/internal_functions.r
R/plainMethod_exportDF.r
R/classMethods_getTables.r
R/classMethod_stoichiometry.r
R/classMethod_getDim.r
R/classMethod_initStepper.r
R/plainMethod_forcingFunctions.r
R/internal_constants.r
R/classMethod_finalize.r
R/classMethods_lib.r
inst/doc/rodeoVignette.R
inst/doc/rodeoVignette.Rmd
inst/doc/rodeoVignette.pdf
inst/doc/examples/1D/advectionDispersion/xecute.r
inst/doc/examples/1D/advectionDispersion/functions.f95
inst/doc/examples/1D/advectionDispersion/pros.txt
inst/doc/examples/1D/advectionDispersion/pars.txt
inst/doc/examples/1D/advectionDispersion/vars.txt
inst/doc/examples/1D/advectionDispersion/stoi.txt
inst/doc/examples/1D/advectionDispersion/funs.txt
inst/doc/examples/1D/advectionDispersion/fig/reach.odg
inst/doc/examples/1D/advectionDispersion/fig/reach.png
inst/doc/examples/1D/groundwater/xecute.r
inst/doc/examples/1D/groundwater/functions.f95
inst/doc/examples/1D/groundwater/pros.txt
inst/doc/examples/1D/groundwater/pars.txt
inst/doc/examples/1D/groundwater/vars.txt
inst/doc/examples/1D/groundwater/stoi.txt
inst/doc/examples/1D/groundwater/funs.txt
inst/doc/examples/1D/groundwater/fig/watershed.odg
inst/doc/examples/1D/groundwater/fig/watershed.png
inst/doc/examples/1D/diffusion/xecute.r
inst/doc/examples/1D/diffusion/pros.txt
inst/doc/examples/1D/diffusion/pars.txt
inst/doc/examples/1D/diffusion/vars.txt
inst/doc/examples/1D/diffusion/stoi.txt
inst/doc/examples/1D/diffusion/fig/diffusion.png
inst/doc/examples/1D/diffusion/fig/diffusion.odg
inst/doc/examples/1D/tetracycline/xecute.r
inst/doc/examples/1D/tetracycline/functions.f95
inst/doc/examples/1D/tetracycline/pros.txt
inst/doc/examples/1D/tetracycline/pars.txt
inst/doc/examples/1D/tetracycline/vars.txt
inst/doc/examples/1D/tetracycline/stoi.txt
inst/doc/examples/1D/tetracycline/funs.txt
inst/doc/examples/1D/tetracycline/fig/tanksInSeries.odg
inst/doc/examples/1D/tetracycline/fig/tanksInSeries.png
inst/doc/examples/0D/streeterPhelpsLike/xecute.r
inst/doc/examples/0D/streeterPhelpsLike/pros.txt
inst/doc/examples/0D/streeterPhelpsLike/pars.txt
inst/doc/examples/0D/streeterPhelpsLike/vars.txt
inst/doc/examples/0D/streeterPhelpsLike/stoi.txt
inst/doc/examples/0D/streeterPhelpsLike/funs.txt
inst/doc/examples/0D/streeterPhelpsLike/fig/system.odp
inst/doc/examples/0D/streeterPhelpsLike/fig/system.png
inst/doc/examples/0D/twoZonesStirredTank/xecute.r
inst/doc/examples/0D/twoZonesStirredTank/pros.txt
inst/doc/examples/0D/twoZonesStirredTank/pars.txt
inst/doc/examples/0D/twoZonesStirredTank/vars.txt
inst/doc/examples/0D/twoZonesStirredTank/stoi.txt
inst/doc/examples/0D/twoZonesStirredTank/fig/system.odg
inst/doc/examples/0D/twoZonesStirredTank/fig/system.png
inst/doc/examples/linked/waterSediment/functions.f95
inst/doc/examples/linked/waterSediment/xecute_multiObject.r
inst/doc/examples/linked/waterSediment/xecute_singleObject.r
inst/doc/examples/linked/waterSediment/fig/system.odp
inst/doc/examples/linked/waterSediment/fig/system.png
inst/doc/examples/linked/waterSediment/singleObject/pros.txt
inst/doc/examples/linked/waterSediment/singleObject/pars.txt
inst/doc/examples/linked/waterSediment/singleObject/vars.txt
inst/doc/examples/linked/waterSediment/singleObject/stoi.txt
inst/doc/examples/linked/waterSediment/singleObject/funs.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_stoi.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_vars.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_stoi.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_pars.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_pros.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_funs.txt
inst/doc/examples/linked/waterSediment/multiObject/sed_funs.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_pros.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_pars.txt
inst/doc/examples/linked/waterSediment/multiObject/wat_vars.txt
inst/doc/vignetteData/fortran/functionsCode.f95
inst/doc/vignetteData/fortran/fortranForcingsTest.f95
inst/doc/vignetteData/fig/overview.png
inst/doc/vignetteData/fig/reactor.png
inst/doc/vignetteData/fig/reactor.odg
inst/doc/vignetteData/fig/overview.odg
inst/fortran/forcingsInclude.f95
inst/fortran/integrators.f95
inst/fortran/forcingsGenericMethods.f95
build/vignette.rds
vignettes/.install_extras
vignettes/rodeoVignette.Rmd
vignettes/references.bib
vignettes/preamble-latex.tex
vignettes/examples/1D/advectionDispersion/xecute.r
vignettes/examples/1D/advectionDispersion/functions.f95
vignettes/examples/1D/advectionDispersion/pros.txt
vignettes/examples/1D/advectionDispersion/pars.txt
vignettes/examples/1D/advectionDispersion/vars.txt
vignettes/examples/1D/advectionDispersion/stoi.txt
vignettes/examples/1D/advectionDispersion/funs.txt
vignettes/examples/1D/advectionDispersion/fig/reach.odg
vignettes/examples/1D/advectionDispersion/fig/reach.png
vignettes/examples/1D/groundwater/xecute.r
vignettes/examples/1D/groundwater/functions.f95
vignettes/examples/1D/groundwater/pros.txt
vignettes/examples/1D/groundwater/pars.txt
vignettes/examples/1D/groundwater/vars.txt
vignettes/examples/1D/groundwater/stoi.txt
vignettes/examples/1D/groundwater/funs.txt
vignettes/examples/1D/groundwater/fig/watershed.odg
vignettes/examples/1D/groundwater/fig/watershed.png
vignettes/examples/1D/diffusion/xecute.r
vignettes/examples/1D/diffusion/pros.txt
vignettes/examples/1D/diffusion/pars.txt
vignettes/examples/1D/diffusion/vars.txt
vignettes/examples/1D/diffusion/stoi.txt
vignettes/examples/1D/diffusion/fig/diffusion.png
vignettes/examples/1D/diffusion/fig/diffusion.odg
vignettes/examples/1D/tetracycline/xecute.r
vignettes/examples/1D/tetracycline/functions.f95
vignettes/examples/1D/tetracycline/pros.txt
vignettes/examples/1D/tetracycline/pars.txt
vignettes/examples/1D/tetracycline/vars.txt
vignettes/examples/1D/tetracycline/stoi.txt
vignettes/examples/1D/tetracycline/funs.txt
vignettes/examples/1D/tetracycline/fig/tanksInSeries.odg
vignettes/examples/1D/tetracycline/fig/tanksInSeries.png
vignettes/examples/0D/streeterPhelpsLike/xecute.r
vignettes/examples/0D/streeterPhelpsLike/pros.txt
vignettes/examples/0D/streeterPhelpsLike/pars.txt
vignettes/examples/0D/streeterPhelpsLike/vars.txt
vignettes/examples/0D/streeterPhelpsLike/stoi.txt
vignettes/examples/0D/streeterPhelpsLike/funs.txt
vignettes/examples/0D/streeterPhelpsLike/fig/system.odp
vignettes/examples/0D/streeterPhelpsLike/fig/system.png
vignettes/examples/0D/twoZonesStirredTank/xecute.r
vignettes/examples/0D/twoZonesStirredTank/pros.txt
vignettes/examples/0D/twoZonesStirredTank/pars.txt
vignettes/examples/0D/twoZonesStirredTank/vars.txt
vignettes/examples/0D/twoZonesStirredTank/stoi.txt
vignettes/examples/0D/twoZonesStirredTank/fig/system.odg
vignettes/examples/0D/twoZonesStirredTank/fig/system.png
vignettes/examples/linked/waterSediment/functions.f95
vignettes/examples/linked/waterSediment/xecute_multiObject.r
vignettes/examples/linked/waterSediment/xecute_singleObject.r
vignettes/examples/linked/waterSediment/fig/system.odp
vignettes/examples/linked/waterSediment/fig/system.png
vignettes/examples/linked/waterSediment/singleObject/pros.txt
vignettes/examples/linked/waterSediment/singleObject/pars.txt
vignettes/examples/linked/waterSediment/singleObject/vars.txt
vignettes/examples/linked/waterSediment/singleObject/stoi.txt
vignettes/examples/linked/waterSediment/singleObject/funs.txt
vignettes/examples/linked/waterSediment/multiObject/wat_stoi.txt
vignettes/examples/linked/waterSediment/multiObject/sed_vars.txt
vignettes/examples/linked/waterSediment/multiObject/sed_stoi.txt
vignettes/examples/linked/waterSediment/multiObject/sed_pars.txt
vignettes/examples/linked/waterSediment/multiObject/sed_pros.txt
vignettes/examples/linked/waterSediment/multiObject/wat_funs.txt
vignettes/examples/linked/waterSediment/multiObject/sed_funs.txt
vignettes/examples/linked/waterSediment/multiObject/wat_pros.txt
vignettes/examples/linked/waterSediment/multiObject/wat_pars.txt
vignettes/examples/linked/waterSediment/multiObject/wat_vars.txt
vignettes/vignetteData/fortran/functionsCode.f95
vignettes/vignetteData/fortran/fortranForcingsTest.f95
vignettes/vignetteData/fig/overview.png
vignettes/vignetteData/fig/reactor.png
vignettes/vignetteData/fig/reactor.odg
vignettes/vignetteData/fig/overview.odg
data/funs.r
data/vars.r
data/stoi.r
data/pars.r
data/pros.r
man/compile.Rd
man/setVars.Rd
man/pars.Rd
man/forcingFunctions.Rd
man/stoichiometry.Rd
man/generate.Rd
man/funs.Rd
man/setPars.Rd
man/stoi.Rd
man/dynamics.Rd
man/rodeo-package.Rd
man/stoiCheck.Rd
man/getPars.Rd
man/pros.Rd
man/libFunc.Rd
man/initStepper.Rd
man/vars.Rd
man/initialize.Rd
man/stoiCreate.Rd
man/step.Rd
man/libName.Rd
man/plotStoichiometry.Rd
man/getVars.Rd
man/rodeo-class.Rd
man/exportDF.Rd
man/finalize.Rd
