rodeo-package: Package to Facilitate ODE-Based Modeling
In rodeo: A Code Generator for ODE-Based Models

Description Details Class and class methods Non-class methods Author(s)

This package provides methods to

import a conceptual ODE-based model stored in tabular form (i.e. as text files or spreadsheets).
generate source code (either R or Fortran) to be passed to an ODE-solver.
visualize and export basic information about a model, e.g. for documentation purposes.

Consult the package vignette for details. The concept of writing an ODE system in tabular/matrix form is nicely introduced, e. g., in the book of Reichert, P., Borchardt, D., Henze, M., Rauch, W., Shanahan, P., Somlyody, L., and Vanrolleghem, P. A. (2001): River water quality model No. 1, IWA publishing, ISBN 9781900222822.

The current source code repository is https://github.com/dkneis/rodeo.

See rodeo-class for the rodeo class and the corresponding class methods.

Type help(package="rodeo") or see the links below to access the documentation of non-class methods contained in the package.

forcingFunctions Generation of forcing functions in Fortran.
exportDF Export of data frames as TEX or HTML code.
stoiCreate Creates a stoichiometry matrix from a set of chemical reactions.
stoiCheck Validates a stoichiometry matrix by checking for conservation of mass.

david.kneis@tu-dresden.de

rodeo documentation built on March 28, 2021, 1:09 a.m.