make_ld_matrix: Helper function to pull LD data from NCBI.
In rolypoly: Identifying Trait-Relevant Functional Annotations
Description
Usage
Arguments
Value
Examples
Description
Given the path of a gwas file open it into a data.table object
Usage
1
make_ld_matrix(all_snps, ld_data)
Arguments
all_snps
The snps that were queried
ld_data
A returned LD matrix with SNP, Proxy, and RSquared columns
Value
an LD matrix where query snps will be the first columns in the correct order
Examples
1
## Not run: make_ld_matrix(all_snps, ld_data)
rolypoly documentation built on May 2, 2019, 2:47 p.m.
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Description Usage Arguments Value Examples
Description
Given the path of a gwas file open it into a data.table object
Usage
1 | make_ld_matrix(all_snps, ld_data)
|
Arguments
all_snps |
The snps that were queried |
ld_data |
A returned LD matrix with SNP, Proxy, and RSquared columns |
Value
an LD matrix where query snps will be the first columns in the correct order
Examples
1 | ## Not run: make_ld_matrix(all_snps, ld_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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