NEWS.md

In romic: R for High-Dimensional Omic Data

romic 1.1.3

New Features

• get_tomic_table() makes it easy to pull individual tables out of tomic objects. #55

Minor Improvements and Fixes

• Bug fix in add_pcs() #52
• added option to not display percent variance explained on PCs to add_pcs() #53
• Added passing of axis and colorbar labels in plot_heatmap() #60
• Updated romic-package alias so package documentation properly displays with ?romic #63
• Renamed tests and greatly expanded test coverage. #64

romic 1.1.1

New Features

• plot_bivariate() supports setting size, alpha, and shape. #48
• add_pc_loadings() changed to add_pcs() for accuracy. Added fraction of variability explained by PCs to add_pcs(). #32
• plot_univariate() and plot_bivariate() supporting providing a partial string match to a variable name. This helps to generate consisitent plots even if names might change (like PC1 (10%)). #44
• tidy_omics and triple_omics can now include a list with unstructured data. This puts the convention more in line with an H5AD file. #43. This is currently only used to return the fraction of variance explained by each PC as part of add_pcs(). #42

Minor Improvements and Fixes

• plot_heatmap() rowlabels are suppressed when there are too many features rather than setting size to zero. #45
• plot_heatmap() supports ordered objects. #37
• coerce_to_classes() added support for glue objects. #35
• Added additional checks to retain the class of primary keys and tests of coversions. #33

romic documentation built on Sept. 21, 2023, 9:06 a.m.