Global functions | |
---|---|
.collection_find_collections | Source code |
.collection_properties | Source code |
.get_collection | Source code |
.get_study | Source code |
.get_study_meta | Source code |
.get_study_subtree | Source code |
.get_study_tree | Source code |
.source_list | Source code |
.studies_find_studies | Source code |
.studies_find_trees | Source code |
.studies_properties | Source code |
.taxonomy_about | Source code |
.taxonomy_mrca | Source code |
.taxonomy_subtree | Source code |
.taxonomy_taxon_info | Source code |
.tnrs_contexts | Source code |
.tnrs_infer_context | Source code |
.tnrs_match_names | Source code |
.tol_about | Source code |
.tol_induced_subtree | Source code |
.tol_mrca | Source code |
.tol_node_info | Source code |
.tol_subtree | Source code |
`[.otl_ott_id` | Source code |
add_otl_class | Source code |
build_empty_row | Source code |
build_lineage | Source code |
build_summary_match | Source code |
candidate_for_synth | Man page Source code |
candidate_for_synth.study_meta | Man page Source code |
check_args_match_names | Source code |
check_factory | Source code |
check_is_flag | Source code |
check_is_string | Source code |
check_label_format | Source code |
check_lineage | Source code |
check_node_ids | Source code |
check_numeric | Source code |
check_ott_ids | Source code |
check_tnrs | Source code |
check_valid_node_id | Source code |
clean_tnrs_summary | Source code |
convert_to_logical | Source code |
dedup_lbl | Source code |
deduplicate_labels | Source code |
extract_title | Source code |
flags | Man page Source code |
flags.match_names | Man page |
flags.taxon_info | Man page |
flags.taxon_mrca | Man page |
get_lineage | Source code |
get_list_element | Source code |
get_pmid | Source code |
get_publication | Man page Source code |
get_publication.study_meta | Man page Source code |
get_study | Man page Source code |
get_study_meta | Man page Source code |
get_study_otu | Source code |
get_study_otumap | Source code |
get_study_otus | Source code |
get_study_subtree | Man page Source code |
get_study_tree | Man page Source code |
get_study_year | Man page Source code |
get_study_year.study_meta | Man page Source code |
get_tree_ids | Man page Source code |
get_tree_ids.study_meta | Man page Source code |
highest_match_score | Source code |
inspect | Man page Source code |
inspect.match_names | Man page Source code |
is_in_tree | Man page Source code |
is_in_tree.default | Source code |
is_in_tree.otl_ott_id | Source code |
is_otl_online | Source code |
is_suppressed | Man page Source code |
is_suppressed.taxon_info | Man page |
is_suppressed.taxon_mrca | Man page |
is_taxon | Source code |
limit_trees | Source code |
list_trees | Man page Source code |
list_trees.matched_studies | Man page Source code |
lowest_ott_id | Source code |
match_names_method_factory | Source code |
match_names_taxon_method_factory | Source code |
match_row_number | Source code |
nexml_from_otl | Source code |
otl_GET | Source code |
otl_POST | Source code |
otl_base_url | Source code |
otl_check | Source code |
otl_check_error | Source code |
otl_formats | Source code |
otl_ottid_from_label | Source code |
otl_parse | Source code |
otl_url | Source code |
otl_version | Source code |
ott_id | Man page Source code |
ott_id.match_names | Man page |
ott_id.taxon_info | Man page |
ott_id.taxon_mrca | Man page |
ott_id.tol_mrca | Man page |
ott_id.tol_node | Man page |
ott_id.tol_summary | Man page |
parse_newick | Source code |
phylo_from_otl | Source code |
print.study_external_data | Source code |
print.study_ids | Source code |
print.study_meta | Source code |
print.tnrs_contexts | Source code |
print.tol_mrca | Source code |
print.tol_node | Source code |
print.tol_summary | Source code |
rotl | Man page |
rotl_is_flag | Source code |
rotl_is_string | Source code |
source_list | Man page Source code |
source_list.tol_mrca | Man page |
source_list.tol_node | Man page |
source_list.tol_summary | Man page |
strip_ott_ids | Man page Source code |
studies_find_studies | Man page Source code |
studies_find_trees | Man page Source code |
studies_properties | Man page Source code |
study_external_IDs | Man page Source code |
summarize_meta | Source code |
summary_row_factory | Source code |
synonyms | Man page Source code |
synonyms.match_names | Man page |
synonyms.taxon_info | Man page |
tax_access_factory | Source code |
tax_lineage | Man page Source code |
tax_lineage.taxon_info | Man page Source code |
tax_lineage.tol_node | Man page Source code |
tax_name | Man page Source code |
tax_name.taxon_info | Man page |
tax_name.taxon_mrca | Man page |
tax_name.tol_mrca | Man page |
tax_name.tol_node | Man page |
tax_name.tol_summary | Man page |
tax_rank | Man page Source code |
tax_rank.taxon_info | Man page |
tax_rank.taxon_mrca | Man page |
tax_rank.tol_mrca | Man page |
tax_rank.tol_node | Man page |
tax_rank.tol_summary | Man page |
tax_sources | Man page Source code |
tax_sources.taxon_info | Man page |
tax_sources.taxon_mrca | Man page |
tax_sources.tol_mrca | Man page |
tax_sources.tol_node | Man page |
tax_sources.tol_summary | Man page |
taxon_external_IDs | Man page Source code |
taxon_info_method_factory | Source code |
taxon_mrca_method_factory | Source code |
taxonomy_about | Man page Source code |
taxonomy_mrca | Man page Source code |
taxonomy_subtree | Man page Source code |
taxonomy_taxon_info | Man page Source code |
tnrs_contexts | Man page Source code |
tnrs_infer_context | Man page Source code |
tnrs_match_names | Man page Source code |
tol_about | Man page Source code |
tol_about_method_factory | Source code |
tol_induced_subtree | Man page Source code |
tol_lineage | Man page Source code |
tol_lineage.tol_node | Man page Source code |
tol_mrca | Man page Source code |
tol_mrca_method_factory | Source code |
tol_node_info | Man page Source code |
tol_node_method_factory | Source code |
tol_subtree | Man page Source code |
tree_to_labels | Source code |
unique_name | Man page Source code |
unique_name.taxon_info | Man page |
unique_name.taxon_mrca | Man page |
unique_name.tol_mrca | Man page |
unique_name.tol_node | Man page |
unique_name.tol_summary | Man page |
update.match_names | Man page Source code |
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