API for rotl
Interface to the 'Open Tree of Life' API

Global functions
.collection_find_collections Source code
.collection_properties Source code
.get_collection Source code
.get_study Source code
.get_study_meta Source code
.get_study_subtree Source code
.get_study_tree Source code
.source_list Source code
.studies_find_studies Source code
.studies_find_trees Source code
.studies_properties Source code
.taxonomy_about Source code
.taxonomy_mrca Source code
.taxonomy_subtree Source code
.taxonomy_taxon_info Source code
.tnrs_contexts Source code
.tnrs_infer_context Source code
.tnrs_match_names Source code
.tol_about Source code
.tol_induced_subtree Source code
.tol_mrca Source code
.tol_node_info Source code
.tol_subtree Source code
`[.otl_ott_id` Source code
add_otl_class Source code
build_empty_row Source code
build_lineage Source code
build_summary_match Source code
candidate_for_synth Man page Source code
candidate_for_synth.study_meta Man page Source code
check_args_match_names Source code
check_label_format Source code
check_lineage Source code
check_node_ids Source code
check_numeric Source code
check_ott_ids Source code
check_tnrs Source code
check_valid_node_id Source code
clean_tnrs_summary Source code
convert_to_logical Source code
dedup_lbl Source code
deduplicate_labels Source code
extract_title Source code
flags Man page Source code
flags.match_names Man page
flags.taxon_info Man page
flags.taxon_mrca Man page
get_lineage Source code
get_list_element Source code
get_pmid Source code
get_publication Man page Source code
get_publication.study_meta Man page Source code
get_study Man page Source code
get_study_meta Man page Source code
get_study_otu Source code
get_study_otumap Source code
get_study_otus Source code
get_study_subtree Man page Source code
get_study_tree Man page Source code
get_study_year Man page Source code
get_study_year.study_meta Man page Source code
get_tree_ids Man page Source code
get_tree_ids.study_meta Man page Source code
inspect Man page Source code
inspect.match_names Man page Source code
is_in_tree Man page Source code
is_in_tree.default Source code
is_in_tree.otl_ott_id Source code
is_suppressed Man page Source code
is_suppressed.taxon_info Man page
is_suppressed.taxon_mrca Man page
is_taxon Source code
limit_trees Source code
list_trees Man page Source code
list_trees.matched_studies Man page Source code
lowest_ott_id Source code
match_names_method_factory Source code
match_names_taxon_method_factory Source code
match_row_number Source code
nexml_from_otl Source code
otl_GET Source code
otl_POST Source code
otl_check Source code
otl_check_error Source code
otl_formats Source code
otl_ottid_from_label Source code
otl_parse Source code
otl_url Source code
otl_version Source code
ott_id Man page Source code
ott_id.match_names Man page
ott_id.taxon_info Man page
ott_id.taxon_mrca Man page
ott_id.tol_mrca Man page
ott_id.tol_node Man page
ott_id.tol_summary Man page
parse_newick Source code
phylo_from_otl Source code
print.study_external_data Source code
print.study_ids Source code
print.study_meta Source code
print.tnrs_contexts Source code
print.tol_mrca Source code
print.tol_node Source code
print.tol_summary Source code
rotl Man page
source_list Man page Source code
source_list.tol_mrca Man page
source_list.tol_node Man page
source_list.tol_summary Man page
strip_ott_ids Man page Source code
studies_find_studies Man page Source code
studies_find_trees Man page Source code
studies_properties Man page Source code
study_external_IDs Man page Source code
summarize_meta Source code
summary_row_factory Source code
synonyms Man page Source code
synonyms.match_names Man page
synonyms.taxon_info Man page
tax_access_factory Source code
tax_lineage Man page Source code
tax_lineage.taxon_info Man page Source code
tax_lineage.tol_node Man page Source code
tax_name Man page Source code
tax_name.taxon_info Man page
tax_name.taxon_mrca Man page
tax_name.tol_mrca Man page
tax_name.tol_node Man page
tax_name.tol_summary Man page
tax_rank Man page Source code
tax_rank.taxon_info Man page
tax_rank.taxon_mrca Man page
tax_rank.tol_mrca Man page
tax_rank.tol_node Man page
tax_rank.tol_summary Man page
tax_sources Man page Source code
tax_sources.taxon_info Man page
tax_sources.taxon_mrca Man page
tax_sources.tol_mrca Man page
tax_sources.tol_node Man page
tax_sources.tol_summary Man page
taxon_external_IDs Man page Source code
taxon_info_method_factory Source code
taxon_mrca_method_factory Source code
taxonomy_about Man page Source code
taxonomy_mrca Man page Source code
taxonomy_subtree Man page Source code
taxonomy_taxon_info Man page Source code
tnrs_contexts Man page Source code
tnrs_infer_context Man page Source code
tnrs_match_names Man page Source code
tol_about Man page Source code
tol_about_method_factory Source code
tol_induced_subtree Man page Source code
tol_lineage Man page Source code
tol_lineage.tol_node Man page Source code
tol_mrca Man page Source code
tol_mrca_method_factory Source code
tol_node_info Man page Source code
tol_node_method_factory Source code
tol_subtree Man page Source code
tree_to_labels Source code
unique_name Man page Source code
unique_name.taxon_info Man page
unique_name.taxon_mrca Man page
unique_name.tol_mrca Man page
unique_name.tol_node Man page
unique_name.tol_summary Man page
update.match_names Man page Source code
rotl documentation built on Oct. 23, 2020, 8:22 p.m.