tax_lineage: Lineage of a taxon
In rotl: Interface to the 'Open Tree of Life' API
tax_lineage R Documentation
Lineage of a taxon
Description
Extract the lineage information (higher taxonomy) from an object
returned by taxonomy_taxon_info.
Usage
tax_lineage(tax, ...)
## S3 method for class 'taxon_info'
tax_lineage(tax, ...)
Arguments
tax
an object created by taxonomy_taxon_info
using the argument include_lineage=TRUE.
...
additional arguments (currently unused).
Details
The object passed to this function must have been created using
the argument include_lineage=TRUE.
Value
A list with one slot per taxon that contains a data frame
with 3 columns: the taxonomy rank, the name, and unique name
for all taxa included in the lineage of the taxon up to the
root of the tree.
rotl documentation built on July 9, 2023, 7:37 p.m.
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| tax_lineage | R Documentation |
Lineage of a taxon
Description
Extract the lineage information (higher taxonomy) from an object
returned by taxonomy_taxon_info.
Usage
tax_lineage(tax, ...)
## S3 method for class 'taxon_info'
tax_lineage(tax, ...)
Arguments
tax |
an object created by |
... |
additional arguments (currently unused). |
Details
The object passed to this function must have been created using
the argument include_lineage=TRUE.
Value
A list with one slot per taxon that contains a data frame with 3 columns: the taxonomy rank, the name, and unique name for all taxa included in the lineage of the taxon up to the root of the tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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