do3Scale: Centering and scaling

In rrcov3way: Robust Methods for Multiway Data Analysis, Applicable also for Compositional Data

Centering and scaling

Description

Centering and/or normalization of a three way array or a matricized array across one mode (modes indicated by "A", "B" or "C").

Usage

    ## S3 method for class 'tucker3'
do3Scale(x, renorm.mode = c("A", "B", "C"), ...)
    ## S3 method for class 'parafac'
do3Scale(x, renorm.mode = c("A", "B", "C"), ...)
    ## Default S3 method:
do3Scale(x, center = FALSE, scale = FALSE, 
        center.mode = c("A", "B", "C", "AB", "AC", "BC", "ABC"), 
        scale.mode = c("B", "A", "C"), 
        only.data=TRUE, ...)

Arguments

x	Three dimensional array of order (I x J x K) or a matrix (or data.frame coerced to a matrix) of order (I x JK) containing the matricized array (frontal slices)
center	Whether and how to center the data. Can be NULL, logical TRUE or FALSE, function or a numeric vector with length corresponding to the number of columns in the corresponding mode. If center=TRUE, mean() is used; default is center=FALSE.
scale	Whether and how to scale the data. Can be NULL, logical TRUE or FALSE, function or a numeric vector with length corresponding to the number of columns in the corresponding mode. If scale=TRUE, sd() is used; default is scale=FALSE.
center.mode	Across which mode to center. Default is center.mode="A"
scale.mode	Within which mode to scale. Default is scale.mode="B"
renorm.mode	Within which mode to renormalize a Parafac or Tucker3 solution. See in Details how this is performed for the different models. Default is renorm.mode="A"
only.data	Whether to return only the centered/scaled data or also the center and the scale themselves. Default is only.data=TRUE
...	potential further arguments passed to lower level functions.

Value

A named list, consisting of the centered and/or scaled data, a center vector, a scale vector and the mode in which the data were centered/scaled.

Author(s)

Valentin Todorov [e-mail] and Maria Anna Di Palma [e-mail] and Michele Gallo [e-mail]

References

Kiers, H.A.L. (2000).Towards a standardizrd notation and terminology in multiway analysis. Journal of Chemometrics, 14:105-122.

Kroonenberg, P.M. (1983).Three-mode principal component analysis: Theory and applications (Vol. 2), DSWO press.

Examples

    data(elind)
    (x1 <- do3Scale(elind, center=TRUE, scale=TRUE))
    (x2 <- do3Scale(elind, center=TRUE, scale=TRUE, center.mode="B"))
    (x3 <- do3Scale(elind, center=TRUE, scale=TRUE, center.mode="C", scale.mode="C"))

rrcov3way documentation built on July 9, 2023, 7:44 p.m.