rsatscan: Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software

SaTScan(TM) (http://www.satscan.org) is software for finding regions in Time, Space, or Time-Space that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing to generate P-values for these regions. The rsatscan package provides functions for writing R data frames in SaTScan-readable formats, for setting SaTScan parameters, for running SaTScan in the OS, and for reading the files that SaTScan creates.

Author
Ken Kleinman [aut, cre]
Date of publication
2015-03-17 18:02:49
Maintainer
Ken Kleinman <ken.kleinman@gmail.com>
License
GPL-3
Version
0.3.9200
URLs

View on CRAN

Man pages

charlistopts
Change list version of paramaters into char vector
NHumbersidecas
North Humberside leukemian and lymphoma example- cases
NHumbersidectl
North Humberside leukemian and lymphoma example- controls
NHumbersidegeo
North Humberside leukemian and lymphoma example- geography
NMcas
New Mexico Brain Cancer example- cases
NMgeo
New Mexico Brain Cancer example- geography
NMpop
New Mexico Brain Cancer example- population
NYCfevercas
New York City Fever example- cases
NYCfevergeo
New York City Fever example- geography
print.satscan
Methods for satscan-class objects
read.col
Read SaTScan output files
read.gis
Read SaTScan output files
read.llr
Read SaTScan output files
read.rr
Read SaTScan output files
read.satscanmain
Read SaTScan output files
read.sci
Read SaTScan output files
rsatscan
R functions, a class, and methods for working with SaTScan...
satscan
Run SaTScan in the OS
ss.options
Set or reset parameters to be used by SaTScan
ss.options.extra
Add lines to the current SaTScan parameter list
subin
Substitute new values into the input object
summary.satscan
Methods for satscan-class objects
write.adj
Write a SaTScan adj file
write.cas
Write a SaTScan cas (case) file
write.ctl
Write a SaTScan ctl (control) file
write.geo
Write a SaTScan geo file
write.grd
Write a SaTScan grd (grid) file
write.ha
Write a SaTScan ha (alternative hypothesis) file
write.max
Write a SaTScan max file
write.met
Write a SaTScan met file
write.nbr
Write a SaTScan nbr (neighbor) file
write.pop
Write a SaTScan pop (population) file
write.ss.prm
Write the SaTScan parameter file

Files in this package

rsatscan
rsatscan/inst
rsatscan/inst/doc
rsatscan/inst/doc/rsatscan.R
rsatscan/inst/doc/simulation.Rmd
rsatscan/inst/doc/simulation.R
rsatscan/inst/doc/simulation.html
rsatscan/inst/doc/rsatscan.html
rsatscan/inst/doc/rsatscan.Rmd
rsatscan/NAMESPACE
rsatscan/NEWS
rsatscan/data
rsatscan/data/NMgeo.rda
rsatscan/data/NYCfevergeo.rda
rsatscan/data/NHumbersidecas.rda
rsatscan/data/NHumbersidegeo.rda
rsatscan/data/NHumbersidectl.rda
rsatscan/data/NMpop.rda
rsatscan/data/NMcas.rda
rsatscan/data/NYCfevercas.rda
rsatscan/R
rsatscan/R/stringfunctions.R
rsatscan/R/DataDoc.R
rsatscan/R/readfiles.R
rsatscan/R/write.R
rsatscan/R/rsatscan.R
rsatscan/R/methods.R
rsatscan/R/params.R
rsatscan/R/satscan.R
rsatscan/R/zzz.R
rsatscan/vignettes
rsatscan/vignettes/simulation.Rmd
rsatscan/vignettes/rsatscan.Rmd
rsatscan/README.md
rsatscan/MD5
rsatscan/build
rsatscan/build/vignette.rds
rsatscan/DESCRIPTION
rsatscan/man
rsatscan/man/write.geo.Rd
rsatscan/man/write.grd.Rd
rsatscan/man/ss.options.extra.Rd
rsatscan/man/read.rr.Rd
rsatscan/man/print.satscan.Rd
rsatscan/man/NHumbersidecas.Rd
rsatscan/man/NMgeo.Rd
rsatscan/man/NYCfevercas.Rd
rsatscan/man/write.cas.Rd
rsatscan/man/rsatscan.Rd
rsatscan/man/satscan.Rd
rsatscan/man/NMcas.Rd
rsatscan/man/summary.satscan.Rd
rsatscan/man/write.adj.Rd
rsatscan/man/write.ctl.Rd
rsatscan/man/read.llr.Rd
rsatscan/man/NMpop.Rd
rsatscan/man/NHumbersidegeo.Rd
rsatscan/man/ss.options.Rd
rsatscan/man/subin.Rd
rsatscan/man/read.gis.Rd
rsatscan/man/write.max.Rd
rsatscan/man/read.sci.Rd
rsatscan/man/write.ss.prm.Rd
rsatscan/man/write.met.Rd
rsatscan/man/NHumbersidectl.Rd
rsatscan/man/charlistopts.Rd
rsatscan/man/write.ha.Rd
rsatscan/man/read.satscanmain.Rd
rsatscan/man/NYCfevergeo.Rd
rsatscan/man/write.nbr.Rd
rsatscan/man/write.pop.Rd
rsatscan/man/read.col.Rd