rsatscan: Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software

SaTScan(TM) (http://www.satscan.org) is software for finding regions in Time, Space, or Time-Space that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing to generate P-values for these regions. The rsatscan package provides functions for writing R data frames in SaTScan-readable formats, for setting SaTScan parameters, for running SaTScan in the OS, and for reading the files that SaTScan creates.

AuthorKen Kleinman [aut, cre]
Date of publication2015-03-17 18:02:49
MaintainerKen Kleinman <ken.kleinman@gmail.com>
LicenseGPL-3
Version0.3.9200
http://www.satscan.org

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Man pages

charlistopts: Change list version of paramaters into char vector

NHumbersidecas: North Humberside leukemian and lymphoma example- cases

NHumbersidectl: North Humberside leukemian and lymphoma example- controls

NHumbersidegeo: North Humberside leukemian and lymphoma example- geography

NMcas: New Mexico Brain Cancer example- cases

NMgeo: New Mexico Brain Cancer example- geography

NMpop: New Mexico Brain Cancer example- population

NYCfevercas: New York City Fever example- cases

NYCfevergeo: New York City Fever example- geography

print.satscan: Methods for satscan-class objects

read.col: Read SaTScan output files

read.gis: Read SaTScan output files

read.llr: Read SaTScan output files

read.rr: Read SaTScan output files

read.satscanmain: Read SaTScan output files

read.sci: Read SaTScan output files

rsatscan: R functions, a class, and methods for working with SaTScan...

satscan: Run SaTScan in the OS

ss.options: Set or reset parameters to be used by SaTScan

ss.options.extra: Add lines to the current SaTScan parameter list

subin: Substitute new values into the input object

summary.satscan: Methods for satscan-class objects

write.adj: Write a SaTScan adj file

write.cas: Write a SaTScan cas (case) file

write.ctl: Write a SaTScan ctl (control) file

write.geo: Write a SaTScan geo file

write.grd: Write a SaTScan grd (grid) file

write.ha: Write a SaTScan ha (alternative hypothesis) file

write.max: Write a SaTScan max file

write.met: Write a SaTScan met file

write.nbr: Write a SaTScan nbr (neighbor) file

write.pop: Write a SaTScan pop (population) file

write.ss.prm: Write the SaTScan parameter file

Files in this package

rsatscan
rsatscan/inst
rsatscan/inst/doc
rsatscan/inst/doc/rsatscan.R
rsatscan/inst/doc/simulation.Rmd
rsatscan/inst/doc/simulation.R
rsatscan/inst/doc/simulation.html
rsatscan/inst/doc/rsatscan.html
rsatscan/inst/doc/rsatscan.Rmd
rsatscan/NAMESPACE
rsatscan/NEWS
rsatscan/data
rsatscan/data/NMgeo.rda
rsatscan/data/NYCfevergeo.rda
rsatscan/data/NHumbersidecas.rda
rsatscan/data/NHumbersidegeo.rda
rsatscan/data/NHumbersidectl.rda
rsatscan/data/NMpop.rda
rsatscan/data/NMcas.rda
rsatscan/data/NYCfevercas.rda
rsatscan/R
rsatscan/R/stringfunctions.R rsatscan/R/DataDoc.R rsatscan/R/readfiles.R rsatscan/R/write.R rsatscan/R/rsatscan.R rsatscan/R/methods.R rsatscan/R/params.R rsatscan/R/satscan.R rsatscan/R/zzz.R
rsatscan/vignettes
rsatscan/vignettes/simulation.Rmd
rsatscan/vignettes/rsatscan.Rmd
rsatscan/README.md
rsatscan/MD5
rsatscan/build
rsatscan/build/vignette.rds
rsatscan/DESCRIPTION
rsatscan/man
rsatscan/man/write.geo.Rd rsatscan/man/write.grd.Rd rsatscan/man/ss.options.extra.Rd rsatscan/man/read.rr.Rd rsatscan/man/print.satscan.Rd rsatscan/man/NHumbersidecas.Rd rsatscan/man/NMgeo.Rd rsatscan/man/NYCfevercas.Rd rsatscan/man/write.cas.Rd rsatscan/man/rsatscan.Rd rsatscan/man/satscan.Rd rsatscan/man/NMcas.Rd rsatscan/man/summary.satscan.Rd rsatscan/man/write.adj.Rd rsatscan/man/write.ctl.Rd rsatscan/man/read.llr.Rd rsatscan/man/NMpop.Rd rsatscan/man/NHumbersidegeo.Rd rsatscan/man/ss.options.Rd rsatscan/man/subin.Rd rsatscan/man/read.gis.Rd rsatscan/man/write.max.Rd rsatscan/man/read.sci.Rd rsatscan/man/write.ss.prm.Rd rsatscan/man/write.met.Rd rsatscan/man/NHumbersidectl.Rd rsatscan/man/charlistopts.Rd rsatscan/man/write.ha.Rd rsatscan/man/read.satscanmain.Rd rsatscan/man/NYCfevergeo.Rd rsatscan/man/write.nbr.Rd rsatscan/man/write.pop.Rd rsatscan/man/read.col.Rd

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