rsatscan: Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software

SaTScan(TM) (http://www.satscan.org) is software for finding regions in Time, Space, or Time-Space that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing to generate P-values for these regions. The rsatscan package provides functions for writing R data frames in SaTScan-readable formats, for setting SaTScan parameters, for running SaTScan in the OS, and for reading the files that SaTScan creates.

AuthorKen Kleinman [aut, cre]
Date of publication2015-03-17 18:02:49
MaintainerKen Kleinman <ken.kleinman@gmail.com>
LicenseGPL-3
Version0.3.9200
http://www.satscan.org

View on CRAN

Man pages

charlistopts: Change list version of paramaters into char vector

NHumbersidecas: North Humberside leukemian and lymphoma example- cases

NHumbersidectl: North Humberside leukemian and lymphoma example- controls

NHumbersidegeo: North Humberside leukemian and lymphoma example- geography

NMcas: New Mexico Brain Cancer example- cases

NMgeo: New Mexico Brain Cancer example- geography

NMpop: New Mexico Brain Cancer example- population

NYCfevercas: New York City Fever example- cases

NYCfevergeo: New York City Fever example- geography

print.satscan: Methods for satscan-class objects

read.col: Read SaTScan output files

read.gis: Read SaTScan output files

read.llr: Read SaTScan output files

read.rr: Read SaTScan output files

read.satscanmain: Read SaTScan output files

read.sci: Read SaTScan output files

rsatscan: R functions, a class, and methods for working with SaTScan...

satscan: Run SaTScan in the OS

ss.options: Set or reset parameters to be used by SaTScan

ss.options.extra: Add lines to the current SaTScan parameter list

subin: Substitute new values into the input object

summary.satscan: Methods for satscan-class objects

write.adj: Write a SaTScan adj file

write.cas: Write a SaTScan cas (case) file

write.ctl: Write a SaTScan ctl (control) file

write.geo: Write a SaTScan geo file

write.grd: Write a SaTScan grd (grid) file

write.ha: Write a SaTScan ha (alternative hypothesis) file

write.max: Write a SaTScan max file

write.met: Write a SaTScan met file

write.nbr: Write a SaTScan nbr (neighbor) file

write.pop: Write a SaTScan pop (population) file

write.ss.prm: Write the SaTScan parameter file

Functions

charlistopts Man page
NHumbersidecas Man page
NHumbersidectl Man page
NHumbersidegeo Man page
NMcas Man page
NMgeo Man page
NMpop Man page
NYCfevercas Man page
NYCfevergeo Man page
print.satscan Man page
read.col Man page
read.gis Man page
read.llr Man page
read.rr Man page
read.satscanmain Man page
read.sci Man page
rsatscan Man page
rsatscan-package Man page
satscan Man page
ss.options Man page
ss.options.extra Man page
subin Man page
summary.satscan Man page
write.adj Man page
write.cas Man page
write.ctl Man page
write.geo Man page
write.grd Man page
write.ha Man page
write.max Man page
write.met Man page
write.nbr Man page
write.pop Man page
write.ss.prm Man page

Files

rsatscan
rsatscan/inst
rsatscan/inst/doc
rsatscan/inst/doc/rsatscan.R
rsatscan/inst/doc/simulation.Rmd
rsatscan/inst/doc/simulation.R
rsatscan/inst/doc/simulation.html
rsatscan/inst/doc/rsatscan.html
rsatscan/inst/doc/rsatscan.Rmd
rsatscan/NAMESPACE
rsatscan/NEWS
rsatscan/data
rsatscan/data/NMgeo.rda
rsatscan/data/NYCfevergeo.rda
rsatscan/data/NHumbersidecas.rda
rsatscan/data/NHumbersidegeo.rda
rsatscan/data/NHumbersidectl.rda
rsatscan/data/NMpop.rda
rsatscan/data/NMcas.rda
rsatscan/data/NYCfevercas.rda
rsatscan/R
rsatscan/R/stringfunctions.R rsatscan/R/DataDoc.R rsatscan/R/readfiles.R rsatscan/R/write.R rsatscan/R/rsatscan.R rsatscan/R/methods.R rsatscan/R/params.R rsatscan/R/satscan.R rsatscan/R/zzz.R
rsatscan/vignettes
rsatscan/vignettes/simulation.Rmd
rsatscan/vignettes/rsatscan.Rmd
rsatscan/README.md
rsatscan/MD5
rsatscan/build
rsatscan/build/vignette.rds
rsatscan/DESCRIPTION
rsatscan/man
rsatscan/man/write.geo.Rd rsatscan/man/write.grd.Rd rsatscan/man/ss.options.extra.Rd rsatscan/man/read.rr.Rd rsatscan/man/print.satscan.Rd rsatscan/man/NHumbersidecas.Rd rsatscan/man/NMgeo.Rd rsatscan/man/NYCfevercas.Rd rsatscan/man/write.cas.Rd rsatscan/man/rsatscan.Rd rsatscan/man/satscan.Rd rsatscan/man/NMcas.Rd rsatscan/man/summary.satscan.Rd rsatscan/man/write.adj.Rd rsatscan/man/write.ctl.Rd rsatscan/man/read.llr.Rd rsatscan/man/NMpop.Rd rsatscan/man/NHumbersidegeo.Rd rsatscan/man/ss.options.Rd rsatscan/man/subin.Rd rsatscan/man/read.gis.Rd rsatscan/man/write.max.Rd rsatscan/man/read.sci.Rd rsatscan/man/write.ss.prm.Rd rsatscan/man/write.met.Rd rsatscan/man/NHumbersidectl.Rd rsatscan/man/charlistopts.Rd rsatscan/man/write.ha.Rd rsatscan/man/read.satscanmain.Rd rsatscan/man/NYCfevergeo.Rd rsatscan/man/write.nbr.Rd rsatscan/man/write.pop.Rd rsatscan/man/read.col.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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