rsatscan: Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software
Version 0.3.9200

SaTScan(TM) (http://www.satscan.org) is software for finding regions in Time, Space, or Time-Space that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing to generate P-values for these regions. The rsatscan package provides functions for writing R data frames in SaTScan-readable formats, for setting SaTScan parameters, for running SaTScan in the OS, and for reading the files that SaTScan creates.

AuthorKen Kleinman [aut, cre]
Date of publication2015-03-17 18:02:49
MaintainerKen Kleinman <ken.kleinman@gmail.com>
LicenseGPL-3
Version0.3.9200
URL http://www.satscan.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rsatscan")

Getting started

README.md
rsatscan"
Simulation experiments with SaTScan and rsatscan"

Popular man pages

NMcas: New Mexico Brain Cancer example- cases
NMgeo: New Mexico Brain Cancer example- geography
NYCfevercas: New York City Fever example- cases
read.satscanmain: Read SaTScan output files
read.sci: Read SaTScan output files
ss.options.extra: Add lines to the current SaTScan parameter list
write.adj: Write a SaTScan adj file
See all...

All man pages Function index File listing

Man pages

charlistopts: Change list version of paramaters into char vector
NHumbersidecas: North Humberside leukemian and lymphoma example- cases
NHumbersidectl: North Humberside leukemian and lymphoma example- controls
NHumbersidegeo: North Humberside leukemian and lymphoma example- geography
NMcas: New Mexico Brain Cancer example- cases
NMgeo: New Mexico Brain Cancer example- geography
NMpop: New Mexico Brain Cancer example- population
NYCfevercas: New York City Fever example- cases
NYCfevergeo: New York City Fever example- geography
print.satscan: Methods for satscan-class objects
read.col: Read SaTScan output files
read.gis: Read SaTScan output files
read.llr: Read SaTScan output files
read.rr: Read SaTScan output files
read.satscanmain: Read SaTScan output files
read.sci: Read SaTScan output files
rsatscan: R functions, a class, and methods for working with SaTScan...
satscan: Run SaTScan in the OS
ss.options: Set or reset parameters to be used by SaTScan
ss.options.extra: Add lines to the current SaTScan parameter list
subin: Substitute new values into the input object
summary.satscan: Methods for satscan-class objects
write.adj: Write a SaTScan adj file
write.cas: Write a SaTScan cas (case) file
write.ctl: Write a SaTScan ctl (control) file
write.geo: Write a SaTScan geo file
write.grd: Write a SaTScan grd (grid) file
write.ha: Write a SaTScan ha (alternative hypothesis) file
write.max: Write a SaTScan max file
write.met: Write a SaTScan met file
write.nbr: Write a SaTScan nbr (neighbor) file
write.pop: Write a SaTScan pop (population) file
write.ss.prm: Write the SaTScan parameter file

Functions

NHumbersidecas Man page
NHumbersidectl Man page
NHumbersidegeo Man page
NMcas Man page
NMgeo Man page
NMpop Man page
NYCfevercas Man page
NYCfevergeo Man page
charlistopts Man page Source code
onAttach Source code
print.satscan Man page Source code
read.col Man page Source code
read.gis Man page Source code
read.llr Man page Source code
read.rr Man page Source code
read.satscanmain Man page Source code
read.sci Man page Source code
rsatscan Man page
rsatscan-package Man page
satscan Man page Source code
ss.options Man page Source code
ss.options.extra Man page Source code
stripslash Source code
subin Man page Source code
summary.satscan Man page Source code
write.adj Man page Source code
write.cas Man page Source code
write.ctl Man page Source code
write.geo Man page Source code
write.grd Man page Source code
write.ha Man page Source code
write.max Man page Source code
write.met Man page Source code
write.nbr Man page Source code
write.pop Man page Source code
write.ss.prm Man page Source code

Files

inst
inst/doc
inst/doc/rsatscan.R
inst/doc/simulation.Rmd
inst/doc/simulation.R
inst/doc/simulation.html
inst/doc/rsatscan.html
inst/doc/rsatscan.Rmd
NAMESPACE
NEWS
data
data/NMgeo.rda
data/NYCfevergeo.rda
data/NHumbersidecas.rda
data/NHumbersidegeo.rda
data/NHumbersidectl.rda
data/NMpop.rda
data/NMcas.rda
data/NYCfevercas.rda
R
R/stringfunctions.R
R/DataDoc.R
R/readfiles.R
R/write.R
R/rsatscan.R
R/methods.R
R/params.R
R/satscan.R
R/zzz.R
vignettes
vignettes/simulation.Rmd
vignettes/rsatscan.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/write.geo.Rd
man/write.grd.Rd
man/ss.options.extra.Rd
man/read.rr.Rd
man/print.satscan.Rd
man/NHumbersidecas.Rd
man/NMgeo.Rd
man/NYCfevercas.Rd
man/write.cas.Rd
man/rsatscan.Rd
man/satscan.Rd
man/NMcas.Rd
man/summary.satscan.Rd
man/write.adj.Rd
man/write.ctl.Rd
man/read.llr.Rd
man/NMpop.Rd
man/NHumbersidegeo.Rd
man/ss.options.Rd
man/subin.Rd
man/read.gis.Rd
man/write.max.Rd
man/read.sci.Rd
man/write.ss.prm.Rd
man/write.met.Rd
man/NHumbersidectl.Rd
man/charlistopts.Rd
man/write.ha.Rd
man/read.satscanmain.Rd
man/NYCfevergeo.Rd
man/write.nbr.Rd
man/write.pop.Rd
man/read.col.Rd
rsatscan documentation built on May 19, 2017, 10:49 a.m.