This package provides functions for calculating associations between two genes with five correlation methods(e.g., the Gini correlation coefficient [GCC], the Pearson's product moment correlation coefficient [PCC], the Kendall tau rank correlation coefficient [KCC], the Spearman's rank correlation coefficient [SCC] and the Tukey's biweight correlation coefficient [BiWt], and three non-correlation methods (e.g., mutual information [MI] and the maximal information-based nonparametric exploration [MINE], and the euclidean distance [ED]). It can also been implemented to perform the correlation and clustering analysis of transcriptomic data profiled by microarray and RNA-Seq technologies. Additionally, this package can be further applied to construct gene co-expression networks (GCNs).
Package details |
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Author | Chuang Ma, Xiangfeng Wang |
Maintainer | Chuang Ma <chuangma2006@gmail.com> |
License | GPL (>= 2) |
Version | 1.0.6 |
URL | http://www.cmbb.arizona.edu/ |
Package repository | View on CRAN |
Installation |
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