Description Usage Arguments Details Value Author(s) See Also Examples
Compare two correlations produced by GCC method for a gene pair, and choose one as the final output of GCC method.
1 | gcc.corfinal(gcccor)
|
gcccor |
a list output by cor.pair function for GCC method. |
If the p-value is "NA", the correlation with absolute maximum value is selected; otherwise, the correlation with lower p-value is chosen.
gcc.fcor |
the final correlation of GCC. |
gcc.fpavlue |
the final pvalue of correlation. |
Chuang Ma, Xiangfeng Wang
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ## Not run:
data(rsgcc)
x <- rnaseq[1:4,]
#compute correlation between 1th and 4th genes
#significance level of the computed correlation
#is calcuated with 200 permutation tests.
corpair <- cor.pair(c(1,4), GEMatrix = x, rowORcol = "row",
cormethod = "GCC", pernum = 200,
sigmethod = "two.sided")
#get the final correlation and p-value of GCC method
gcc.corfinal(corpair)
## End(Not run)
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