Description Usage Arguments Details Value Author(s) See Also Examples

Compare two correlations produced by GCC method for a gene pair, and choose one as the final output of GCC method.

1 | ```
gcc.corfinal(gcccor)
``` |

`gcccor` |
a list output by cor.pair function for GCC method. |

If the p-value is "NA", the correlation with absolute maximum value is selected; otherwise, the correlation with lower p-value is chosen.

`gcc.fcor ` |
the final correlation of GCC. |

`gcc.fpavlue ` |
the final pvalue of correlation. |

Chuang Ma, Xiangfeng Wang

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ```
## Not run:
data(rsgcc)
x <- rnaseq[1:4,]
#compute correlation between 1th and 4th genes
#significance level of the computed correlation
#is calcuated with 200 permutation tests.
corpair <- cor.pair(c(1,4), GEMatrix = x, rowORcol = "row",
cormethod = "GCC", pernum = 200,
sigmethod = "two.sided")
#get the final correlation and p-value of GCC method
gcc.corfinal(corpair)
## End(Not run)
``` |

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