API for rstap
Spatial Temporal Aggregated Predictor Models via 'stan'
| Global functions | |
|---|---|
| .aux_name | Source code |
| .calculate_stap_X | Source code |
| .check_bef_data | Source code |
| .cnms | Source code |
| .cnms.stapreg | Source code |
| .find_root | Source code |
| .flist | Source code |
| .flist.stapreg | Source code |
| .format_pars | Source code |
| .get_crs_mat | Source code |
| .get_crs_u | Source code |
| .glmer_check | Source code |
| .handle_missing_stap | Source code |
| .ll_Gamma_i | Source code |
| .ll_binomial_i | Source code |
| .ll_gaussian_i | Source code |
| .ll_inverse.gaussian_i | Source code |
| .ll_neg_binomial_2_i | Source code |
| .ll_poisson_i | Source code |
| .max_treedepth | Source code |
| .median_and_madsd | Source code |
| .merge_data | Source code |
| .mu | Source code |
| .nxdata | Source code |
| .onLoad | Source code |
| .pp_Gamma | Source code |
| .pp_binomial | Source code |
| .pp_data | Source code |
| .pp_data_mer | Source code |
| .pp_data_mer_w | Source code |
| .pp_data_mer_z | Source code |
| .pp_data_offset | Source code |
| .pp_gaussian | Source code |
| .pp_inverse.gaussian | Source code |
| .pp_neg_binomial_2 | Source code |
| .pp_poisson | Source code |
| .print_covariance_prior | Source code |
| .print_scalar_prior | Source code |
| .print_vector_prior | Source code |
| .printfr | Source code |
| .rename_aux | Source code |
| .rinvGauss | Source code |
| .stap_samples | Source code |
| .waic | Source code |
| .weighted | Source code |
| .xdata | Source code |
| STOP_no_draws | Source code |
| VarCorr | Man page |
| VarCorr.stapreg | Man page Source code |
| `%ORifINF%` | Source code |
| `%ORifNULL%` | Source code |
| adapt_delta | Man page |
| allow_special_parnames | Source code |
| any_sap | Source code |
| any_sap.stap_data | Source code |
| any_stap | Source code |
| any_stap.stap_data | Source code |
| any_tap | Source code |
| any_tap.default | Source code |
| any_tap.stap_data | Source code |
| array1D_check | Source code |
| as.array.stapreg | Man page Source code |
| as.data.frame.stapreg | Man page Source code |
| as.data.frame.summary.stapreg | Man page Source code |
| as.matrix.stapreg | Man page Source code |
| assign_st_weight | Source code |
| assign_weight | Source code |
| b_names | Source code |
| beta_names | Source code |
| beta_names.stap_data | Source code |
| binom_y_prop | Source code |
| cauchy | Man page Source code |
| center_z | Source code |
| check_constant_vars | Man page Source code |
| check_data_frame | Source code |
| check_dups | Source code |
| check_dups.stap_data | Source code |
| check_missing_pars | Source code |
| check_reTrms | Source code |
| check_rhats | Source code |
| check_stanfit | Source code |
| check_theta_priors | Source code |
| coef.stapreg | Man page Source code |
| coef_mer | Source code |
| coef_names | Source code |
| coef_names.default | Source code |
| coef_names.stap_data | Source code |
| collect_pars | Source code |
| confint.stapreg | Man page Source code |
| decov | Man page Source code |
| default_stan_control | Source code |
| drop_redundant_dims | Source code |
| example_model | Man page |
| exclude_lp_and_ppd | Source code |
| exponential | Man page Source code |
| extract_crs_data | Source code |
| extract_stap_data | Source code |
| fac2bin | Source code |
| family.stapreg | Man page Source code |
| family_plus_link | Source code |
| fitted.stapreg | Man page Source code |
| fixef | Man page |
| fixef.stapreg | Man page Source code |
| formula.stapreg | Man page Source code |
| formula_string | Source code |
| get_space_constraint | Source code |
| get_stap_code | Source code |
| get_stap_name | Source code |
| get_stapless_formula | Man page Source code |
| get_time_constraint | Source code |
| get_w | Man page Source code |
| get_w.lmerMod | Source code |
| get_weight_code | Source code |
| get_weight_function | Source code |
| get_weight_name | Source code |
| get_x | Man page Source code |
| get_x.default | Man page Source code |
| get_x.lmerMod | Source code |
| get_y | Man page Source code |
| get_y.default | Source code |
| get_z | Man page Source code Source code |
| get_z.default | Man page Source code |
| get_z.lmerMod | Source code |
| grep_for_pars | Source code |
| handle_glm_prior | Source code |
| handle_theta_stap_prior | Source code |
| homog_distance_data | Man page |
| homog_longitudinal_bef_data | Man page |
| homog_longitudinal_distance_data | Man page |
| homog_longitudinal_subject_data | Man page |
| homog_longitudinal_time_data | Man page |
| homog_subject_data | Man page |
| is.binomial | Source code |
| is.gamma | Source code |
| is.gaussian | Source code |
| is.ig | Source code |
| is.mer | Source code |
| is.nb | Source code |
| is.poisson | Source code |
| is.stapreg | Source code |
| justRE | Source code |
| laplace | Man page Source code |
| lasso | Man page Source code |
| last_dimnames | Source code |
| linear_predictor | Source code |
| linear_predictor.default | Source code |
| linear_predictor.matrix | Source code |
| linkinv | Source code |
| linkinv.family | Source code |
| linkinv.stapreg | Source code |
| lkj | Man page Source code |
| ll_args | Source code |
| ll_args.stapreg | Source code |
| ll_fun | Source code |
| log_lik | Man page |
| log_lik.stapreg | Man page Source code |
| log_normal | Man page Source code |
| make_b_nms | Source code |
| make_glmerControl | Source code |
| make_stap_summary | Source code |
| maybe_broadcast | Source code Source code |
| mcmc_function_name | Source code |
| model.frame.stapreg | Man page Source code |
| model.matrix.stapreg | Man page Source code |
| model_has_weights | Source code |
| needs_chains | Source code |
| nfix | Man page Source code |
| nfix.stapreg | Man page Source code |
| ngrps.stapreg | Man page Source code |
| nlist | Source code |
| nobs.stapreg | Man page Source code |
| normal | Man page Source code |
| nsap | Man page Source code |
| nsap.stapreg | Man page Source code |
| nstap | Man page Source code |
| nstap.stapreg | Man page Source code |
| ntap | Man page Source code |
| ntap.stapreg | Man page Source code |
| null_or_zero | Source code |
| pad_reTrms | Source code |
| pairs.stapreg | Man page Source code |
| pairs_condition | Man page |
| pairs_style_np | Man page |
| paste_bars | Source code |
| paste_scale | Source code |
| plot.stapreg | Man page Source code |
| posterior_interval | Man page |
| posterior_interval.stapreg | Man page Source code |
| posterior_predict | Man page |
| posterior_predict.stapreg | Man page Source code |
| posterior_sample_size | Source code |
| pp_args | Source code |
| pp_b_ord | Source code |
| pp_binomial_trials | Source code |
| pp_data | Source code |
| pp_eta | Source code |
| pp_fun | Source code |
| predictive_error | Man page |
| predictive_error.ppd | Source code |
| predictive_error.stapreg | Man page Source code |
| predictive_interval | Man page |
| predictive_interval.ppd | Man page Source code |
| predictive_interval.stapreg | Man page Source code |
| print.prior_summary.stapreg | Source code |
| print.stapreg | Man page Source code |
| print.summary.stapreg | Man page Source code |
| prior_summary | Man page |
| prior_summary.stapreg | Man page Source code |
| priors | Man page |
| product_normal | Man page Source code |
| ranef.stapreg | Man page Source code |
| residuals.stapreg | Man page Source code |
| rstap | Man page |
| rstap-datasets | Man page |
| rstap-package | Man page |
| sap_covs | Source code |
| sap_covs.default | Source code |
| sap_covs.stap_data | Source code |
| se | Man page Source code |
| se.stapreg | Man page Source code |
| set_plotting_args | Source code |
| set_plotting_fun | Source code |
| set_prior_scale | Source code Source code |
| set_sampling_args | Source code |
| sigma | Man page |
| sigma.stapreg | Man page Source code |
| stan_family_number | Source code |
| stap_covs | Source code |
| stap_covs.stap_data | Source code |
| stap_data | Man page Source code |
| stap_glm | Man page Source code |
| stap_glm.fit | Man page Source code |
| stap_glmer | Man page Source code |
| stap_lm | Man page Source code |
| stap_lmer | Man page Source code |
| stap_termination | Man page Source code |
| stap_termination.stapreg | Man page Source code |
| stapreg | Man page Source code |
| stapreg-methods | Man page |
| stapreg-objects | Man page |
| stop_data_arg_missing | Source code |
| student_t | Man page Source code |
| summarize_glm_prior | Source code |
| summary.stapreg | Man page Source code |
| supported_glm_links | Source code |
| tap_covs | Source code |
| tap_covs.default | Source code |
| tap_covs.stap_data | Source code |
| terms.stapreg | Man page Source code |
| theta_names | Source code |
| theta_names.stap_data | Source code |
| unpad_reTrms | Source code |
| unpad_reTrms.array | Source code |
| unpad_reTrms.default | Source code |
| validate_data | Source code |
| validate_distancedata | Man page Source code |
| validate_family | Man page Source code |
| validate_glm_formula | Source code |
| validate_glm_outcome_support | Source code |
| validate_newdata | Man page Source code |
| validate_offset | Source code |
| validate_parameter_value | Source code |
| validate_predictiondata | Source code |
| validate_stapreg_object | Source code |
| validate_timedata | Man page Source code |
| validate_weights | Man page Source code |
| vcov.stapreg | Man page Source code |
| waic | Source code |
| waic.stapreg | Man page Source code |
| weight_switch | Source code |
