YAML header:
output: rticles::sim_article: keep_tex: TRUE
Configure the YAML header including the following elements:
title
: Title
author
: List of author(s) containing name
and num
address
: List containing num
and org
for defining author
affiliations
presentaddress
: Not sure what they mean with this
corres
: Author and address for correspondence
authormark
: Short author list for header
received
, revised
, accepted
: dates of submission, revision, and acceptance of the manuscript
abstract
: Limited to 250 words
keywords
: Up to 6 keywords
bibliography
: BibTeX .bib
file
classoption
: options of the WileyNJD-v2
class
longtable
: set to true
to include the longtable
package, used by default from pandoc
to convert markdown to \LaTeX code
In authormark
use et al. if there are three or more authors.
Note the use of num
to link names and addresses.
For submitting a double-spaced manuscript, add doublespace
as an option to a classoption
line in the YAML header: classoption: doublespace
.
Keywords are separated by semicolons.
Use mathematics in Rmarkdown as usual.
Figures are supported from R code:
```r"} x = rnorm(10) y = rnorm(10) plot(x, y)
...and can be referenced (Figure \ref{fig:plot}) by including the `\\label{}` tag in the `fig.cap` attribute of the R chunk: `fig.cap = "Fancy Caption\\label{fig:plot}"`. It is a quirky hack at the moment, see [here](https://github.com/yihui/knitr/issues/323). Analogously, use Rmarkdown to produce tables as usual: ```r if (!require("xtable")) install.packages("xtable") xt <- xtable(head(cars), caption = "A table", label = "tab:table") print(xt, comment = FALSE)
Referenced via \ref{tab:table}. You can also use the YAML option header-includes
to includes custom \LaTeX packages for tables (keep in mind that pandoc
uses longtables
by default, and it is hardcoded; some things may require including the package longtable
). E.g., using ctable
:
header-includes: - \usepackage{ctable}
Then, just write straight-up \LaTeX code and reference is as usual (\ref{tab:ctable}
):
\ctable[cap = {Short caption}, caption = {A long, long, long, long, long caption for this table.}, label={tab:ctable},] {cc} { \tnote[$\ast$]{Footnote 1} \tnote[$\dagger$]{Other footnote} \tnote[b]{Mistakes are possible.} }{ \FL COL 1\tmark[a] & COL 2\tmark[$\ast$] \ML 6.92\tmark[$\dagger$] & 0.09781 \\ 6.93\tmark[$\dagger$] & 0.09901 \\ 97 & 2000 \LL }
It is also possible to set the YAML
option longtable: true
and use markdown tables (or the knitr::kable
function): knitr::kable(head(cars))
produces the same table as the xtable
example presented before.
The use of the Rmarkdown equivalent of the \LaTeX cross-reference system
for figures, tables, equations, etc., is encouraged (using [@<name>]
, equivalent of \ref{<name>}
and \label{<name>}
). That works well for citations in Rmarkdown, not so well for figures and tables. In that case, it is possible to revert to standard \LaTeX syntax.
If you need to double space your document for submission please use the doublespace
option in the header.
Link a .bib
document via the YAML header, and bibliography will be printed at the very end (as usual). The default bibliography style is provided by Wiley as in WileyNJD-AMA.bst
, do not delete that file.
Use the Rmarkdown equivalent of the \LaTeX citation system using [@<name>]
. Example: [@Taylor1937], [@Knupp1999; @Kamm2000].
To include all citation from the .bib
file, add \nocite{*}
before the end of the document.
All \LaTeX enviroments supported by the main template are supported here as well; see the .tex
sample file here for more details and example.
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