Nothing
## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(comment = "#>", collapse = TRUE)
required <- c("bang")
if (!all(unlist(lapply(required, function(pkg) requireNamespace(pkg, quietly = TRUE)))))
knitr::opts_chunk$set(eval = FALSE)
## ---- fig.show='hold'---------------------------------------------------------
# library(rust)
# alpha <- 0.1
# max_phi <- qgamma(0.999, shape = alpha)
# ptr_gam <- create_xptr("logdgamma")
# lambda <- find_lambda_one_d_rcpp(logf = ptr_gam, alpha = alpha,
# max_phi = max_phi)
# # Box-Cox transformation parameter
# lambda$lambda
# gam <- ru_rcpp(logf = ptr_gam, alpha = alpha, d = 1, n = 1000, trans = "BC",
# lambda = lambda)
# plot(gam, xlab = "x")
# plot(gam, ru_scale = TRUE, xlab = "y")
## -----------------------------------------------------------------------------
# ptr_c <- create_xptr("logcauchy")
# cauchy1 <- ru_rcpp(logf = ptr_c, log = TRUE, init = 0, r = 1, n = 1000)
# cauchy126 <- ru_rcpp(logf = ptr_c, log = TRUE, init = 0, r = 1.26, n = 1000)
# cbind(cauchy1$box, cauchy126$box)
# c(cauchy1$pa, cauchy126$pa)
## ---- fig.show='hold'---------------------------------------------------------
# library(bang)
# coag1 <- hanova1(resp = coagulation[, 1], fac = coagulation[, 2], n = 1000)
# coag2 <- hanova1(resp = coagulation[, 1], fac = coagulation[, 2], n = 1000,
# param = "original", r = 1)
# probs <- c(2.5, 25, 50, 75, 97.5) / 100
# all1 <- cbind(coag1$theta_sim_vals, coag1$sim_vals)
# all2 <- cbind(coag2$theta_sim_vals, coag2$sim_vals)
# round(t(apply(all1, 2, quantile, probs = probs)), 1)
# round(t(apply(all2, 2, quantile, probs = probs)), 1)
## -----------------------------------------------------------------------------
# coag1$pa
# coag2$pa
## ---- fig.show='hold'---------------------------------------------------------
# normal_mixture <- function(x, mu, p) {
# return(log(p * dnorm(x) + (1 - p) * dnorm(x, mean = mu)))
# }
#
# res1 <- ru(logf = normal_mixture, mu = 10, p = 0.25, init = -1, n = 1000)
# plot(res1, main = "(a)")
# res2 <- ru(logf = normal_mixture, mu = 10, p = 0.25, init = 11, n = 1000)
# plot(res2, main = "(b)")
# res3 <- ru(logf = normal_mixture, mu = 4, p = 0.25, init = 5, n = 1000)
# plot(res3, main = "(c)")
# res3$pa
# res4 <- ru(logf = normal_mixture, mu = 4, p = 0.25, init = -1, n = 1000)
# plot(res4, main = "(d)")
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