rvalues: R-Values for Ranking in High-Dimensional Settings

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A collection of functions for computing "r-values" from various kinds of user input such as MCMC output or a list of effect size estimates and associated standard errors. Given a large collection of measurement units, the r-value, r, of a particular unit is a reported percentile that may be interpreted as the smallest percentile at which the unit should be placed in the top r-fraction of units.

Author
Nicholas Henderson [cre], Michael Newton [aut]
Date of publication
2015-12-30 08:36:47
Maintainer
Nicholas Henderson <nhenders@stat.wisc.edu>
License
GPL-2
Version
0.6

View on CRAN

Man pages

batavgs
Batting Averages Data
bcwest
Breast Cancer Gene Expression Data
FDRCurve
FDR Curve
fluEnrich
Flu Enrichment Data
hiv
HIV Data Set
MakeGrid
Grid Construction
MCMCtest
MCMC sample output
mroot
Multi-dimensional Root (Zero) Finding
NBA1314
National Basketball Association, free throw data, 2013-2014...
npmixapply
Apply Functions over estimated unit-specific posterior...
npmle
Maximum Likelihood Estimate of a Mixing Distribution.
OverlapCurve
Overlap Curve
PostPercentile
Posterior expected percentiles
PostSummaries
R-values from posterior summary quantities
rvalueBoot
Bootstrapped r-values
rvalues
R-values
rvaluesMCMC
R-values from MCMC output.
tdist
t-distribution family object
TopList
List of Top Units
Valpha
R-values from a matrix of posterior tail probabilities.

Files in this package

rvalues
rvalues/src
rvalues/src/Vcut.c
rvalues/src/postprobpoisson.c
rvalues/src/postprobT.c
rvalues/src/zeroin.c
rvalues/src/postprobbinomial.c
rvalues/src/postprobnormal.c
rvalues/NAMESPACE
rvalues/data
rvalues/data/batavgs.rda
rvalues/data/NBA1314.rda
rvalues/data/fluEnrich.rda
rvalues/data/hiv.rda
rvalues/data/datalist
rvalues/data/bcwest.rda
rvalues/data/MCMCtest.rda
rvalues/R
rvalues/R/rvalues.R
rvalues/R/TopList.R
rvalues/R/NPestT.R
rvalues/R/OverlapCurve.R
rvalues/R/PostPercentile.R
rvalues/R/tdist.R
rvalues/R/npmixapply.R
rvalues/R/NPestBinomial.R
rvalues/R/rvalueGuts.R
rvalues/R/rvalueBoot.R
rvalues/R/NPestPoisson.R
rvalues/R/NPestNormal.R
rvalues/R/npml.R
rvalues/R/ThetaQuantiles.R
rvalues/R/PostSummaries.R
rvalues/R/mroot.R
rvalues/R/NPagrid.R
rvalues/R/FDRCurve.R
rvalues/R/HyperEstimate.R
rvalues/R/MakeGrid.R
rvalues/R/Valpha.R
rvalues/R/Vplot.R
rvalues/R/agrid_fns.R
rvalues/R/rvaluesMCMC.R
rvalues/README.md
rvalues/MD5
rvalues/DESCRIPTION
rvalues/man
rvalues/man/OverlapCurve.Rd
rvalues/man/rvalueBoot.Rd
rvalues/man/tdist.Rd
rvalues/man/MakeGrid.Rd
rvalues/man/FDRCurve.Rd
rvalues/man/fluEnrich.Rd
rvalues/man/Valpha.Rd
rvalues/man/PostPercentile.Rd
rvalues/man/MCMCtest.Rd
rvalues/man/batavgs.Rd
rvalues/man/NBA1314.Rd
rvalues/man/mroot.Rd
rvalues/man/hiv.Rd
rvalues/man/PostSummaries.Rd
rvalues/man/npmixapply.Rd
rvalues/man/npmle.Rd
rvalues/man/bcwest.Rd
rvalues/man/TopList.Rd
rvalues/man/rvaluesMCMC.Rd
rvalues/man/rvalues.Rd