fluEnrich: Flu Enrichment Data
In rvalues: R-Values for Ranking in High-Dimensional Settings
Description
Usage
Format
Details
References
Description
Gene-set enrichment for genes that have been identified as
having an effect on influenza-virus replication.
Usage
1
Format
A data frame with 5719 observations on the following 3 variables.
nflugenesnumber of genes both annotated to the given GO term and in the collection of flu genes
setsizenumber of genes annotated to the given GO term
GO_termsthe GO (gene ontology) term label
Details
These data were produced by associating the 984 genes (the collection of flu genes)
identified in the Hao et al. (2013) meta-analysis with gene ontology (GO) gene sets (GO terms).
In total, 17959 human genes were annotated to at least one GO term and 16572
GO terms were available, though this data set only contains the 5719 terms
which annotated between 10 and 1000 human genes.
References
Hao, L. Q. He, Z. Wang, M. Craven, M. A. Newton, and P. Ahlquist (2013).
Limited agreement of independent RNAi screens for virus-required host genes
owes more to false-negatives than false-positive factors.
PLoS computational biology, 9, 9, e1003235.
rvalues documentation built on March 11, 2021, 9:05 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Details References
Description
Gene-set enrichment for genes that have been identified as having an effect on influenza-virus replication.
Usage
1 |
Format
A data frame with 5719 observations on the following 3 variables.
nflugenesnumber of genes both annotated to the given GO term and in the collection of flu genes
setsizenumber of genes annotated to the given GO term
GO_termsthe GO (gene ontology) term label
Details
These data were produced by associating the 984 genes (the collection of flu genes) identified in the Hao et al. (2013) meta-analysis with gene ontology (GO) gene sets (GO terms). In total, 17959 human genes were annotated to at least one GO term and 16572 GO terms were available, though this data set only contains the 5719 terms which annotated between 10 and 1000 human genes.
References
Hao, L. Q. He, Z. Wang, M. Craven, M. A. Newton, and P. Ahlquist (2013). Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negatives than false-positive factors. PLoS computational biology, 9, 9, e1003235.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.