API for rxSeq
Combined Total and Allele Specific Reads Sequencing Study
| Global functions | |
|---|---|
| `get.better` | Source code |
| `get.inits` | Source code |
| `get.tauB` | Source code |
| `get.tausB` | Source code |
| `input.checks.A` | Source code |
| `input.checks.X` | Source code |
| `ll.aRC.X` | Source code |
| `ll.aRC.theta.A1` | Source code |
| `ll.aRC.theta.A2` | Source code |
| `ll.aRC.theta.A` | Source code |
| `ll.aRC.theta.X` | Source code |
| `ll.aRC` | Source code |
| `ll.jRCI.A.cons1` | Source code |
| `ll.jRCI.A.cons2` | Source code |
| `ll.jRCI.A.cons` | Source code |
| `ll.jRCI.A1` | Source code |
| `ll.jRCI.A2` | Source code |
| `ll.jRCI.A` | Source code |
| `ll.jRCI.X` | Source code |
| `ll.jRCI.ase.b0.A1` | Source code |
| `ll.jRCI.ase.b0.A2` | Source code |
| `ll.jRCI.ase.b0.A` | Source code |
| `ll.jRCI.ase.b0.X` | Source code |
| `ll.jRCI.b0.A1` | Source code |
| `ll.jRCI.b0.A2` | Source code |
| `ll.jRCI.b0.A` | Source code |
| `ll.jRCI.b0.X` | Source code |
| `ll.jRCI.b1.A1` | Source code |
| `ll.jRCI.b1.A2` | Source code |
| `ll.jRCI.b1.A` | Source code |
| `ll.jRCI.b1.X` | Source code |
| `ll.jRCI.sex.A` | Source code |
| `ll.jRCI.sex.X` | Source code |
| `ll.jRCI.sex.b0.A` | Source code |
| `ll.jRCI.sex.b0.X` | Source code |
| `ll.jRCI.sex.b1.A` | Source code |
| `ll.jRCI.trec.ase.A1` | Source code |
| `ll.jRCI.trec.ase.A2` | Source code |
| `ll.jRCI.trec.ase.A` | Source code |
| `ll.jRCI.trec.ase.X` | Source code |
| `ll.tRCI.A` | Source code |
| `ll.tRCI.X` | Source code |
| `ll.tRCI.iphi.A` | Source code |
| `ll.tRCI.iphi.X` | Source code |
| `ll.toRCI.A` | Source code |
| `ll.toRCI.X` | Source code |
| `ll.toRCI.b0.A1` | Source code |
| `ll.toRCI.b0.A2` | Source code |
| `ll.toRCI.b0.A` | Source code |
| `ll.toRCI.b0.X` | Source code |
| `ll.toRCI.iphi.A` | Source code |
| `ll.toRCI.iphi.X` | Source code |
| `ll.toRCI.sex.A` | Source code |
| `ll.toRCI.sex.X` | Source code |
| `ll.toRCI.sex.b0.A` | Source code |
| `ll.toRCI.sex.b0.X` | Source code |
| `logBB` | Source code |
| `loglikNB0` | Source code |
| `loglikNB1` | Source code |
| `loglikNB2` | Source code |
| `loglikNB` | Source code |
| `nLogLik.trec.A` | Source code |
| `nLogLik.trec.X` | Source code |
| `nLogLik.trecase.A` | Source code |
| `nLogLik.trecase.X` | Source code |
| `nLogLik` | Source code |
| `proc.trec.A` | Source code |
| `proc.trec.X` | Source code |
| `proc.trecase.A` | Source code |
| `proc.trecase.X` | Source code |
| `process` | Source code |
| `simRX` | Source code |
| `test` | Source code |
| `trec.b0.A` | Source code |
| `trec.b0.X` | Source code |
| `trec.b1.A` | Source code |
| `trec.b1.X` | Source code |
| `trec.dev.X` | Source code |
| `trec.dom.A` | Source code |
| `trec.dom.X` | Source code |
| `trec.full.A` | Source code |
| `trec.full.X` | Source code |
| `trec.sex.A` | Source code |
| `trec.sex.X` | Source code |
| `trec.sex.b0.A` | Source code |
| `trec.sex.b0.X` | Source code |
| `trec.sex.b1.A` | Source code |
| `trec.sex.dom.A` | Source code |
| `trecase.ase.b0.A` | Source code |
| `trecase.ase.b0.X` | Source code |
| `trecase.b0.A` | Source code |
| `trecase.b0.X` | Source code |
| `trecase.b1.A` | Source code |
| `trecase.b1.X` | Source code |
| `trecase.dev.X` | Source code |
| `trecase.dom.A` | Source code |
| `trecase.dom.X` | Source code |
| `trecase.full.A.cons` | Source code |
| `trecase.full.A` | Source code |
| `trecase.full.X` | Source code |
| `trecase.sex.A` | Source code |
| `trecase.sex.X` | Source code |
| `trecase.sex.b0.A` | Source code |
| `trecase.sex.b0.X` | Source code |
| `trecase.sex.b1.A` | Source code |
| `trecase.sex.dom.A` | Source code |
| `trecase.trec.ase.A` | Source code |
| `trecase.trec.ase.X` | Source code |
| data.A | Man page |
| data.X | Man page |
| get.tausB | Man page |
| nLogLik | Man page |
| process | Man page |
| rcA | Man page |
| rcX | Man page |
| readCounts | Man page |
| simRX | Man page |
| trecase.A.out | Man page |
| trecase.X.out | Man page |
