trecase.X.out: Example of results produced by optimizing step using process...
In rxSeq: Combined Total and Allele Specific Reads Sequencing Study

A list containing test results as well as parameter estimates for joint model evaluated by process function for autosomal genes.

a list of following matrices (if there is only one sex, only the relevant tests and matrices are outputed) :

`pvals`	matrix of p-values from description for each gene corresponding row
`coef.full`	matrix of full model fit coefficients, -log(likelihood at these coefficients),phi, theta (2 overdispersion parameters used)
`coef.add`	matrix of additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.poo`	matrix of parent of origin restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.dom`	matrix of dominance restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.same`	matrix of TReC=ASE additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.ase.add`	matrix of ASE additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.sex`	matrix of sex restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.sex.add`	matrix of sex specific additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`coef.dev.dom`	matrix of dominance deviation for male restricted fit coefficients, -log(likelihood at these coefficients),phi, theta
`errorlist`	a list of errors
`hess.lst`	a list of heassian matrices, if parameter hessian is set to TRUE