Description Value Author(s) See Also Examples
A list containing test results as well as parameter estimates for joint model evaluated by process function for autosomal genes.
a list of following matrices (if there is only one sex, only the relevant tests and matrices are outputed) :
pvals |
matrix of p-values from description for each gene corresponding row |
coef.full |
matrix of full model fit coefficients, -log(likelihood at these coefficients),phi, theta (2 overdispersion parameters used) |
coef.add |
matrix of additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.poo |
matrix of parent of origin restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.dom |
matrix of dominance restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.same |
matrix of TReC=ASE additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.ase.add |
matrix of ASE additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.sex |
matrix of sex restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.sex.add |
matrix of sex specific additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
coef.dev.dom |
matrix of dominance deviation for male restricted fit coefficients, -log(likelihood at these coefficients),phi, theta |
errorlist |
a list of errors |
hess.lst |
a list of heassian matrices, if parameter hessian is set to TRUE |
Vasyl Zhabotynsky vasyl@unc.edu
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