Description Usage Arguments Value Author(s) See Also Examples
Xce estimation for mice with allele specific reads.
1 | get.tausB(n, n0B, geneids, min.cnt=50, exclude.prop=.05, Xist.ID="ENSMUSG00000086503")
|
n |
vector of allele specific counts for each mouse |
n0B |
vector of allele specific counts for allele B |
geneids |
gene IDs |
min.cnt |
minimum number of allele specific counts |
exclude.prop |
minimum proportion of allele specific counts for each allele |
Xist.ID |
and ID of Xist, to exclude it from estimating Xce, since Xce would 1-tausB |
output - matrix of 4 rows:
med.tauB |
taus estimated via median |
ave.tauB |
taus estimated via percent of allele B counts |
all.genes |
number of genes that had passed minimum count |
used.genes |
number of genes that had required percent of each allele |
each column represent respective mouse.
Vasyl Zhabotynsky vasyl@unc.edu
1 2 |
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