Files in rxode2
Facilities for Simulating from ODE-Based Models

configure

MD5

NAMESPACE

DESCRIPTION

cleanup.win

configure.win

cleanup

R/RcppExports.R R/rxode2.R R/asIni.R R/ui-fix.R R/rxSymInv.R R/err-foceiBase.R R/mu.R R/et-helpers.R R/rbind.R R/dfIni.R R/piping-update.R R/assert.R R/etTran.R R/asFunction.R R/asRxui.R R/str.R R/rxIndLin.R R/err-sim.R R/print.R R/rxParams.R R/summary.R R/collectWarnings.R R/dsl.R R/forder.R R/evidPush.R R/format.R R/lrelu.R R/progress.R R/rxSyntaxFunctions.R R/ui-assign-parts.R R/rudfui.R R/et.R R/asModel.R R/rstudio.R R/localOptions.R R/ui.R R/piping.R R/rxsolve.R R/mu-cov-downgrade.R R/selu.R R/piping-ini.R R/rxUiBlessed.R R/rxReservedKeywords.R R/modelExtract.R R/rxode-options.R R/rxFormat.R R/rxPrune.R R/rxRaw.R R/adjointDiscrete.R R/etNew.R R/relu.R R/rxStack.R R/dde.R R/parseFuns.R R/rxSerialize.R R/ui-bind.R R/000.R R/modlib.R R/plot.R R/rxrandomui.R R/rxOom.R R/etVctrs.R R/indLin.R R/dfWishart.R R/rxShiny.R R/piping-model.R R/rxUiGet.R R/genShinyApp.template.R R/linMod.R R/intern.R R/confint.R R/register-s3.R R/mix.R R/eventSens.R R/rxValidate.R R/rxLinCmt.R R/rxode2_md5.R R/geom-amt.R R/softplus.R R/rudf.R R/llik.R R/rxReq.R R/adjoint.R R/build.R R/getBaseSim.R R/ui-rename.R R/odeToLin.R R/version.R R/swish.R R/ui-getControl.R R/fixef.R R/omegaVarCov.R R/DollarNames.R R/rxParseSuppressMsg.R R/geom-cens.R R/reexport.R R/gelu.R R/prelu.R R/mlogit.R R/d.R R/et-methods.R R/symengine.R R/rxCbindStudyIndividual.R R/splitBolus.R R/elu.R R/err.R R/rxrandom.R R/rxOptExpr.R R/CTS.R R/units.R R/plogis.R R/rxResidualError.R R/utils.R R/linCmt.R R/rxJacobian.R R/tran.R R/rxMemoryEstimate.R

src/rxInv.cpp

src/solveWarn.cpp

src/sundials_sundials_math.c

src/seed.cpp

src/rxomp.h

src/genModelVars.c

src/ode_rkv65.cpp

src/ode_rkt98a_bridge.h

src/rkdp65.cpp

src/sundials_sundials_version.c

src/prja.c

src/ode_rkb6_bridge.h

src/cvode_proj_impl.h

src/codegen.c

src/par_solve.h

src/ode_rkh10_bridge.h

src/sundials_logger_impl.h

src/ode_rkss76.cpp

src/parseFunsDosing.h

src/sundials_sundials_profiler.c

src/ode_rk8_12_bridge.h

src/grk4a.cpp

src/strdup_printf.c

src/rko10.cpp

src/rk8_12.cpp

src/ode_rkv98r.cpp

src/ode_rkss76_bridge.h

src/ode_rkf89_bridge.h

src/ode_implicit_bridge.h

src/sundials_profiler_impl.h

src/cvode_impl.h

src/threadSafeConstants.h

src/parseLinCmtTransCl.h

src/rxStack.cpp

src/ode_rkb109_bridge.h

src/ode_rktp75_bridge.h

src/ode_rkk87.cpp

src/rxGlobals.h

src/sundials_sunmatrix_sparse.c

src/ode_rktmy7s_bridge.h

src/ode_rks10_bridge.h

src/utilcpp.cpp

src/rkss76.cpp

src/parseFunsLinCmt.h

src/ode_heun_bridge.h

src/ode_vern76_bridge.h

src/ode_rklk5a_bridge.h

src/rk7.cpp

src/getOption.c

src/rks1110a.cpp

src/rkf1210.cpp

src/parseDfdy.h

src/sundials_sundials_hashmap.c

src/ode_rktf65_bridge.h

src/call_dvode.c

src/common.h

src/sundials_sundials_nvector.c

src/dlsode.f

src/tran.c

src/isEt.c

src/ode_rkv87r.cpp

src/ode_rkssp53_bridge.h

src/linCmt.h

src/dsphiv.f

src/ode_impl.cpp

src/sundials_cvode_ls.c

src/heun.cpp

src/sundials_iterative_impl.h

src/ode_rkb109.cpp

src/approx.cpp

src/sundials_nvector_serial.c

src/rk3.cpp

src/ode_rks4_bridge.h

src/timsort.h

src/RcppExports.cpp

src/ode_vern65_bridge.h

src/rxData.h

src/rkv87r.cpp

src/ode_rkf45_bridge.h

src/rkcv8.cpp

src/macros2micros.h

src/rkb6.cpp

src/ode_rkv65r_bridge.h

src/box.c

src/solsy.c

src/ode_rktmy7s.cpp

src/sundials_sundials_matrix.c

src/rkh10.cpp

src/parseAssignStr.h

src/rxRamBytes.c

src/cvode_solver.cpp

src/ode_rktp86.cpp

src/sbuf.c

src/parseLinCmtTransK.h

src/checkmate.cpp

src/cvode_ls_impl.h

src/ode_rktp64_bridge.h

src/handle_evid.cpp

src/rxode2_df.h

src/parseLinCmtAdjustPars.h

src/dop5.cpp

src/ode_rkt98a.cpp

src/ode_rkf1210_bridge.h

src/ode_rkss54.cpp

src/parseFunsRandom.h

src/udf.cpp

src/ode_rk3_bridge.h

src/ode_rktp64.cpp

src/ode_rkpp54.cpp

src/fnorm.c

src/dop54.cpp

src/linCmtSensType.h

src/ode_dverk65.cpp

src/rxProtect.h

src/solComp.cpp

src/sundials_cli.h

src/ode_rkdp85_bridge.h

src/tran.h

src/sundials_sundials_dense.c

src/ode_rko10_bridge.h

src/rkdp85.cpp

src/rkf45.cpp

src/solComp.h

src/ode_rkf108_bridge.h

src/lsoda_adjoint.cpp

src/parseIdentifier.h

src/rkss54.cpp

src/ode_rkc5_bridge.h

src/rkf89.cpp

src/rkt98a.cpp

src/codegen2.h

src/rkv76r.cpp

src/rklk5b.cpp

src/parseVars.h

src/rkssp53.cpp

src/rk5.cpp

src/stoda.c

src/ode_rkf108.cpp

src/boost.cpp

src/mm.cpp

src/parseIndLin.h

src/rkz10.cpp

src/ode_dop54_bridge.h

src/cbindThetaOmega.cpp

src/dop853.c

src/rks5.cpp

src/ode_rkev87.cpp

src/rkpp54.cpp

src/ode_rks1110a.cpp

src/ode_midpoint_bridge.h

src/codegen.h

src/ode_rkdp65.cpp

src/cvode_r.cpp

src/sundials_sunnonlinsol_newton.c

src/rkv89.cpp

src/implicit_euler_rxode2.hpp

src/nearPD.h

src/par_solve.cpp

src/correction.c

src/strncmpi.c

src/rkls54.cpp

src/rxDerived.cpp

src/cvode_solver.h

src/strncmpi.h

src/ode_ssp3_bridge.h

src/sundials_cvode_diag.c

src/ab_adjoint.cpp

src/sb3am4.cpp

src/rkf78.cpp

src/vern76.cpp

src/vern98.cpp

src/ssp3.cpp

src/odeint_bsd.h

src/sundials_cvode_io.c

src/dlsoda.f

src/abm.cpp

src/sunlinsol_spbcgs.c

src/ode_rks5_bridge.h

src/ode_rk43_bridge.h

src/parseAllowAssign.h

src/rxThreadData.h

src/omegaVarCov.cpp

src/strncmp.h

src/parseStatements.h

src/extraDosing.h

src/bs.cpp

src/sb3a.cpp

src/rkssp43.cpp

src/idamax.c

src/parseLinCmt.c

src/dop87.cpp

src/cvodes_adjoint.cpp

src/orderswitch.c

src/sundials_datanode.h

src/parseLogical.h

src/ode_rkbs32.cpp

src/rkpp54b.cpp

src/ode_rks98_bridge.h

src/rkt54.cpp

src/init.c

src/rk43.cpp

src/linCmtDiffConstant.h

src/rkl5.cpp

src/sundials_system_memory.c

src/ode_trapz_bridge.h

src/genModelVars.h

src/sunlinsol_spgmr.c

src/ode_rkf1412.cpp

src/ode_rkev87_bridge.h

src/omegaChol.c

src/rktp64.cpp

src/opkda2.f

src/ode_rkz10_bridge.h

src/parseDdt.h

src/ode_rkl5_bridge.h

src/linCmt.cpp

src/dvode.f

src/rks4.cpp

src/sundials_adiak_metadata.h

src/lsoda.h

src/dverk78.cpp

src/rklk5a.cpp

src/ode_rkt54.cpp

src/mlogit.h

src/odeinter.h

src/parseCmtProperties.h

src/ode_rkssp43.cpp

src/forder.cpp

src/cfode_static.h

src/daxpy.c

src/ode_rkdp85.cpp

src/parseLinCmtAB.h

src/rkbs54.cpp

src/rk4.cpp

src/ode_rktmy7_bridge.h

src/rkbs32.cpp

src/sundials_sundials_nonlinearsolver.c

src/parseLevels.h

src/rktmy7s.cpp

src/sundials_sundials_band.c

src/ode_rkdp65_bridge.h

src/sundials_sunlinsol_dense.c

src/parseSyntaxErrors.h

src/ode_rkf1210.cpp

src/rkf108.cpp

src/rkc65.cpp

src/install.libs.R

src/rk8_10.cpp

src/trapz.cpp

src/sundials_sundials_iterative.c

src/parseLinCmtApplyCmts.h

src/rkf1412.cpp

src/sundials_debug.h

src/rko129.cpp

src/ros4.cpp

src/rktp75.cpp

src/parseFunsNa.h

src/itostr.c

src/ode_rkr4_bridge.h

src/ode_rkpp54_bridge.h

src/vv.cpp

src/cvPost.cpp

src/rkls44.cpp

src/RxODE_types.h

src/ode_rkls54_bridge.h

src/ode_rk5_bridge.h

src/rxnbinom.h

src/checkmate_stub.c

src/sundials_hashmap_impl.h

src/ode_rkv78_bridge.h

src/sundials_cvode_proj.c

src/macros2micros.cpp

src/ode_rklk5b_bridge.h

src/dverk65.cpp

src/corfailure.c

src/checkmate.h

src/rprintf.c

src/sundials_sunlinsol_band.c

src/ode_dverk65_bridge.h

src/ode_rkv78.cpp

src/sundials_sundials_linearsolver.c

src/ode_rkv65_bridge.h

src/sundials_sundials_context.c

src/ode_rkbs54_bridge.h

src/parseLinCmt.h

src/ode_rks54_bridge.h

src/em.cpp

src/qs.cpp

src/ode_rktmy7.cpp

src/rxode2_sundials_stan_compat.h

src/sundials_sunmatrix_band.c

src/ode_rkv65r.cpp

src/ode_grk4a_bridge.h

src/ode_rks54.cpp

src/methodswitch.c

src/parseLinCmtTransAlpha.h

src/sundials_sundials_errors.c

src/ode_rks1110a_bridge.h

src/rks98.cpp

src/ode_rkv87e_bridge.h

src/dgpadm.f

src/rks10.cpp

src/lsoda_internal.h

src/implicit_solvers.cpp

src/ode_vern98_bridge.h

src/rkv65.cpp

src/rkr4.cpp

src/dvode_support.c

src/strncmp.c

src/ode_euler_bridge.h

src/vmnorm.c

src/rxMemoryComponents.cpp

src/midpoint.cpp

src/rxthreefry.h

src/cvode_diag_impl.h

src/rxData.cpp

src/rkv78.cpp

src/parseLinCmtV.h

src/print_node.h

src/iem.cpp

src/rxode2_altrep.h

src/euler.cpp

src/ode_rkc65_bridge.h

src/intdy.c

src/ode_rk7_bridge.h

src/ode_rk8_10_bridge.h

src/rkv65r.cpp

src/vern65.cpp

src/ode_rkpp54b_bridge.h

src/nearPD.cpp

src/cvode_dense.cpp

src/ode_rkf1412_bridge.h

src/ode_rkcv8_bridge.h

src/Makevars.in

src/rkssp54.cpp

src/matexp.f

src/expandGrid.cpp

src/ode_rks98.cpp

src/rkev87.cpp

src/ode_rkv76r.cpp

src/ode_rkk87_bridge.h

src/ode_rko129_bridge.h

src/rks54.cpp

src/tran.g.d_parser.h

src/sundials_cvode_nls.c

src/rxode2_df.cpp

src/cfode.c

src/rxOptRep.cpp

src/ode_dverk78_bridge.h

src/sundials_sundials_memory.c

src/sundials_sundials_cli.c

src/ode_rkbs32_bridge.h

src/cvode.cpp

src/rkk87.cpp

src/dop853.h

src/rktmy7.cpp

src/rkc5.cpp

src/ode_rkv89.cpp

src/rxSerialize.cpp

src/seed.h

src/blas.h

src/sem.cpp

src/rx2api.c

src/ode_rkc108.cpp

src/common.c

src/rxode2_altrep.c

src/ode_rkc108_bridge.h

src/ode_rkssp43_bridge.h

src/ode_rktp86_bridge.h

src/sundials_utils.h

src/et.cpp

src/ode_rkbs54.cpp

src/ode_rktf65.cpp

src/ode_rkv76r_bridge.h

src/lsoda.c

src/ode_rko129.cpp

src/adjoint.cpp

src/sundials_sunmatrix_dense.c

src/utilc.cpp

src/rkssp22.cpp

src/parseLinCmtCl.h

src/expm.cpp

src/dgefa.c

src/ode_rkf89.cpp

src/sunlinsol_sptfqmr.c

src/ode_rktp75.cpp

src/ode_rkls44_bridge.h

src/ode_rkssp54_bridge.h

src/ck54.cpp

src/ode_rkf32_bridge.h

src/rk4s.cpp

src/getOption.h

src/dgesl.c

src/cfode_static.c

src/ode_rkv98r_bridge.h

src/ode_rkv87e.cpp

src/sundials_sunnonlinsol_fixedpoint.c

src/ode_dop87_bridge.h

src/rkf32.cpp

src/ode_rkv89_bridge.h

src/mlogit.c

src/sundials_macros.h

src/rx2api.h

src/solveWarn.h

src/ode_rkss54_bridge.h

src/sundials_sundials_direct.c

src/print_node.c

src/rkv98r.cpp

src/matexp_HM98.c

src/fast_factor.cpp

src/rkb109.cpp

src/etTran.cpp

src/ode_dverk78.cpp

src/parseFunsDiff.h

src/rkc108.cpp

src/ode_rkv87r_bridge.h

src/ab.cpp

src/ode_rkc65.cpp

src/rktf65.cpp

src/dscal.c

src/rxMemAvail.h

src/cbindThetaOmega.h

src/ode_rkt54_bridge.h

src/parseFuns.h

src/sundials_sundials_logger.c

src/rxthreefry.cpp

src/ddot.c

src/ode_rkf45.cpp

src/scaleh.c

src/rktp86.cpp

src/sundials_cvode.c

src/rkv87e.cpp

src/ode_rkssp22_bridge.h

src/ode_rkpp54b.cpp

src/sundials_inc/sundials/sundials_direct.h

src/sundials_inc/sundials/sundials_export.h

src/sundials_inc/sundials/sundials_core.hpp

src/sundials_inc/sundials/sundials_futils.h

src/sundials_inc/sundials/sundials_mpi_types.h

src/sundials_inc/sundials/sundials_stepper.h

src/sundials_inc/sundials/sundials_profiler.h

src/sundials_inc/sundials/sundials_types.h

src/sundials_inc/sundials/sundials_adaptcontroller.hpp

src/sundials_inc/sundials/sundials_iterative.h

src/sundials_inc/sundials/sundials_matrix.h

src/sundials_inc/sundials/sundials_classview.hpp

src/sundials_inc/sundials/sundials_context.h

src/sundials_inc/sundials/sundials_errors.h

src/sundials_inc/sundials/sundials_nonlinearsolver.hpp

src/sundials_inc/sundials/sundials_dense.h

src/sundials_inc/sundials/sundials_adjointcheckpointscheme.h

src/sundials_inc/sundials/sundials_core.h

src/sundials_inc/sundials/sundials_adjointstepper.h

src/sundials_inc/sundials/sundials_linearsolver.hpp

src/sundials_inc/sundials/sundials_memory.h

src/sundials_inc/sundials/sundials_band.h

src/sundials_inc/sundials/sundials_linearsolver.h

src/sundials_inc/sundials/sundials_domeigestimator.h

src/sundials_inc/sundials/sundials_math.h

src/sundials_inc/sundials/sundials_convertibleto.hpp

src/sundials_inc/sundials/sundials_stepper.hpp

src/sundials_inc/sundials/sundials_logger.h

src/sundials_inc/sundials/sundials_config.h

src/sundials_inc/sundials/sundials_profiler.hpp

src/sundials_inc/sundials/sundials_adaptcontroller.h

src/sundials_inc/sundials/sundials_nonlinearsolver.h

src/sundials_inc/sundials/sundials_domeigestimator.hpp

src/sundials_inc/sundials/NOTICE

src/sundials_inc/sundials/sundials_context.hpp

src/sundials_inc/sundials/sundials_adjointcheckpointscheme.hpp

src/sundials_inc/sundials/LICENSE

src/sundials_inc/sundials/sundials_nvector.hpp

src/sundials_inc/sundials/sundials_base.hpp

src/sundials_inc/sundials/sundials_logger.hpp

src/sundials_inc/sundials/sundials_types_deprecated.h

src/sundials_inc/sundials/sundials_memory.hpp

src/sundials_inc/sundials/sundials_nvector.h

src/sundials_inc/sundials/sundials_matrix.hpp

src/sundials_inc/sundials/sundials_version.h

src/sundials_inc/sundials/sundials_adjointstepper.hpp

src/sundials_inc/sundials/priv/sundials_context_impl.h

src/sundials_inc/sundials/priv/sundials_errors_impl.h

src/sundials_inc/sundials/priv/sundials_logger_macros.h

src/sundials_inc/kinsol/kinsol_bbdpre.h

src/sundials_inc/kinsol/kinsol.hpp

src/sundials_inc/kinsol/kinsol_ls.h

src/sundials_inc/kinsol/kinsol.h

src/sundials_inc/sunadaptcontroller/sunadaptcontroller_mrihtol.h

src/sundials_inc/sunadaptcontroller/sunadaptcontroller_soderlind.h

src/sundials_inc/sunadaptcontroller/sunadaptcontroller_imexgus.h

src/sundials_inc/sunlinsol/sunlinsol_spfgmr.h

src/sundials_inc/sunlinsol/sunlinsol_spgmr.h

src/sundials_inc/sunlinsol/sunlinsol_band.h

src/sundials_inc/sunlinsol/sunlinsol_pcg.h

src/sundials_inc/sunlinsol/sunlinsol_dense.h

src/sundials_inc/sunlinsol/sunlinsol_sptfqmr.h

src/sundials_inc/sunlinsol/sunlinsol_spbcgs.h

src/sundials_inc/sunadjointcheckpointscheme/sunadjointcheckpointscheme_fixed.h

src/sundials_inc/sunadjointcheckpointscheme/sundials_adjointcheckpointscheme.h

src/sundials_inc/sunadjointcheckpointscheme/sundials_adjointstepper.h

src/sundials_inc/sunnonlinsol/sunnonlinsol_fixedpoint.h

src/sundials_inc/sunnonlinsol/sunnonlinsol_newton.h

src/sundials_inc/sundomeigest/sundomeigest_power.h

src/sundials_inc/sunmatrix/sunmatrix_dense.h

src/sundials_inc/sunmatrix/sunmatrix_band.h

src/sundials_inc/sunmatrix/sunmatrix_sparse.h

src/sundials_inc/cvode/cvode.hpp

src/sundials_inc/cvode/cvode_diag.h

src/sundials_inc/cvode/cvode_proj.h

src/sundials_inc/cvode/cvode_ls.h

src/sundials_inc/cvode/cvode_bandpre.h

src/sundials_inc/cvode/cvode.h

src/sundials_inc/cvode/cvode_bbdpre.h

src/sundials_inc/arkode/arkode.hpp

src/sundials_inc/arkode/arkode_ls.h

src/sundials_inc/arkode/arkode_lsrkstep.hpp

src/sundials_inc/arkode/arkode_lsrkstep.h

src/sundials_inc/arkode/arkode_arkstep.hpp

src/sundials_inc/arkode/arkode_sprkstep.hpp

src/sundials_inc/arkode/arkode_erkstep_deprecated.h

src/sundials_inc/arkode/arkode_bbdpre.h

src/sundials_inc/arkode/arkode_erkstep.hpp

src/sundials_inc/arkode/arkode_butcher_erk.h

src/sundials_inc/arkode/arkode_mristep.hpp

src/sundials_inc/arkode/arkode_butcher_dirk.h

src/sundials_inc/arkode/arkode_sprkstep.h

src/sundials_inc/arkode/arkode_erkstep.h

src/sundials_inc/arkode/arkode_mristep_deprecated.h

src/sundials_inc/arkode/arkode_mristep.h

src/sundials_inc/arkode/arkode_forcingstep.h

src/sundials_inc/arkode/arkode_arkstep.h

src/sundials_inc/arkode/arkode_arkstep_deprecated.h

src/sundials_inc/arkode/arkode_sprk.h

src/sundials_inc/arkode/arkode_splittingstep.h

src/sundials_inc/arkode/arkode_sprkstep_deprecated.h

src/sundials_inc/arkode/arkode_butcher.h

src/sundials_inc/arkode/arkode_splittingstep.hpp

src/sundials_inc/arkode/arkode.h

src/sundials_inc/arkode/arkode_forcingstep.hpp

src/sundials_inc/arkode/arkode_bandpre.h

src/sundials_inc/cvodes/cvodes_proj.h

src/sundials_inc/cvodes/cvodes.h

src/sundials_inc/cvodes/cvodes.hpp

src/sundials_inc/cvodes/cvodes_diag.h

src/sundials_inc/cvodes/cvodes_bandpre.h

src/sundials_inc/cvodes/cvodes_ls.h

src/sundials_inc/cvodes/cvodes_bbdpre.h

src/sundials_inc/ida/ida.hpp

src/sundials_inc/ida/ida.h

src/sundials_inc/ida/ida_bbdpre.h

src/sundials_inc/ida/ida_ls.h

src/sundials_inc/sunmemory/sunmemory_system.h

src/sundials_inc/nvector/nvector_serial.h

src/sundials_inc/nvector/nvector_manyvector.h

src/sundials_inc/idas/idas.h

src/sundials_inc/idas/idas_bbdpre.h

src/sundials_inc/idas/idas_ls.h

src/sundials_inc/idas/idas.hpp

src/stl/sunstl_vector.h

src/ode/ode_rks54.h

src/ode/ode_util.h

src/ode/ode_rkv98r.h

src/ode/ode_rosenbrock.h

src/ode/ode_rkv76r.h

src/ode/ode_rkdp85.h

src/ode/ode_rkz10.h

src/ode/ode_rkc5.h

src/ode/ode_rkls44.h

src/ode/ode_rklk5a.h

src/ode/ode_rkt98a.h

src/ode/ode_rklk5b.h

src/ode/ode_rk5.h

src/ode/ode_rktmy7s.h

src/ode/ode_backward_euler.h

src/ode/ode_io.h

src/ode/ode_heun.h

src/ode/ode_rkc108.h

src/ode/ode_dopri_54.h

src/ode/ode_lobatto_iiic_6.h

src/ode/ode_rk.h

src/ode/ode_rkf1412.h

src/ode/ode_rkr4.h

src/ode/ode_rkbs32.h

src/ode/ode_rktp75.h

src/ode/ode_irk.h

src/ode/ode_rkt54.h

src/ode/ode_ssp_3.h

src/ode/ode_newton_bridge.h

src/ode/ode_dopri_87.h

src/ode/ode_rkf89.h

src/ode/ode_vern_76.h

src/ode/ode_dverk65.h

src/ode/ode_rkss76.h

src/ode/ode_rks5.h

src/ode/ode_rktp86.h

src/ode/ode_row6a.h

src/ode/ode_rkv87r.h

src/ode/ode_linalg.h

src/ode/ode_rk_43.h

src/ode/ode_rks1110a.h

src/ode/ode_rkv65r.h

src/ode/ode_rks10.h

src/ode/ode_rk8_12.h

src/ode/ode_rkf45.h

src/ode/ode_rkdp65.h

src/ode/ode_rkf108.h

src/ode/ode_rkb6.h

src/ode/ode_rkl5.h

src/ode/ode_grk4a.h

src/ode/ode_rk3.h

src/ode/ode_rkssp53.h

src/ode/ode_rkpp54b.h

src/ode/ode_rkls54.h

src/ode/ode_newton.h

src/ode/ode_rkk87.h

src/ode/ode_erk.h

src/ode/ode_rkss54.h

src/ode/ode_midpoint.h

src/ode/ode_rkv87e.h

src/ode/ode_geng_5.h

src/ode/ode_radau_iia_5.h

src/ode/ode_gauss_6.h

src/ode/ode_rko10.h

src/ode/ode_rkv89.h

src/ode/ode_rkb109.h

src/ode/ode_embedded.h

src/ode/ode_rkv78.h

src/ode/ode_rktmy7.h

src/ode/ode_euler.h

src/ode/ode_rks4.h

src/ode/ode_dverk78.h

src/ode/ode_adaptive.h

src/ode/ode_rkssp22.h

src/ode/ode_rkbs54.h

src/ode/ode_rkcv8.h

src/ode/ode_rktf65.h

src/ode/ode_rks98.h

src/ode/ode_rkf1210.h

src/ode/ode_rkf_32.h

src/ode/ode_rk7.h

src/ode/ode_rkssp54.h

src/ode/ode_rk8_10.h

src/ode/ode_trapz.h

src/ode/ode_base.h

src/ode/ode_rkpp54.h

src/ode/ode_rkc65.h

src/ode/ode_rkev87.h

src/ode/ode_rkh10.h

src/ode/ode_sdirk_43.h

src/ode/ode_rkv65.h

src/ode/ode_rko129.h

src/ode/ode_vern_98.h

src/ode/ode_rktp64.h

src/ode/ode_vern_65.h

src/ode/ode_rkssp43.h

inst/tran.g

inst/Changes.txt

inst/COPYRIGHTS

inst/CITATION

inst/THANKS

inst/WORDLIST

inst/include/rxode2.h

inst/include/rxode2parseGetTime.h

inst/include/rxode2_control.h

inst/include/rxode2parseHandleEvid.h

inst/include/sbuf.c

inst/include/rxode2dataErr.h

inst/include/rxode2parseSbuf.h

inst/include/rxode2_model_shared.c

inst/include/rxode2_RcppExports.h

inst/include/rxode2EventTranslate.h

inst/include/rxode2parse.h

inst/include/rxode2random_fillVec.h

inst/include/rxMemoryCalc.h

inst/include/rxode2ptr.h

inst/include/needSortDefines.h

inst/include/rxode2_as.h

inst/include/rxode2_model_shared.h

inst/include/rxode2parseVer.h

inst/include/rxode2parse_control.h

inst/include/rxode2parseStruct.h

inst/doc/rxode2-syntax.html

inst/doc/rxode2-syntax.Rmd inst/tutorials/rxode2-00-syntax/RxODE00syntax.Rmd

inst/tutorials/rxode2-00-syntax/images/expandTutorial.png

inst/tutorials/rxode2-01-events/rxode01events.Rmd

inst/tutorials/rxode2-01-events/images/expandTutorial.png

inst/tools/workaround.R

inst/po/en@quot/LC_MESSAGES/R-rxode2.mo

inst/po/en@quot/LC_MESSAGES/R-RxODE.mo

inst/po/en@quot/LC_MESSAGES/RxODE.mo

demo/00Index

demo/demo1.R build/buildLinCmt.R

build/vignette.rds

build/linCmtTest.sh

build/linCmtTest.R build/vendor-sundials.R

build/partial.rdb

tests/testthat/433.rds

tests/testthat/test-lhs-param.R tests/testthat/test-cov.R tests/testthat/test-dde.R tests/testthat/test-newind.R tests/testthat/test-geom-amt.R tests/testthat/test-example-3-3.R tests/testthat/test-ui-assert.R tests/testthat/test-demo.R

tests/testthat/test-issue-468.rds

tests/testthat/test-rxode-issue-272.R tests/testthat/test-as-model.R tests/testthat/test-utils.R tests/testthat/test-rbind.R tests/testthat/test-random.R tests/testthat/test-et-vctrs.R tests/testthat/test-sigdig-tol.R tests/testthat/test-implicit-time.R tests/testthat/test-rxStack-factor.R tests/testthat/test-rxode-issue-352.R

tests/testthat/test-issue-398.rds

tests/testthat/test-tad.R tests/testthat/test-ui.R

tests/testthat/model_default.txt

tests/testthat/test-omegaCubeConvert.R tests/testthat/test-data-frame.R tests/testthat/test-ui-pred-err.R tests/testthat/test-ui-piping.R tests/testthat/test-iCov.R tests/testthat/test-cholperm.R tests/testthat/test-ini.R tests/testthat/test-ui-err.R tests/testthat/test-sens3.R

tests/testthat/nmtest-evid4.rds

tests/testthat/test-100-cmt.R tests/testthat/test-symmetric.R tests/testthat/test-ui-model.R tests/testthat/test-rxode-issue-435.R tests/testthat/test-rxode-issue-050.R tests/testthat/test-ui-props.R

tests/testthat/test-issue-299.rds

tests/testthat/test-infusion-bolus.rds

tests/testthat/test-lincmt-alag-batch.R tests/testthat/test-rk4.R tests/testthat/test-seq.R tests/testthat/test-raw.R tests/testthat/test-rxode-issue-450.R tests/testthat/test-deSolve-events.R tests/testthat/test-bioavailibility.R tests/testthat/test-rk-decay.R

tests/testthat/test-issue-430.rds

tests/testthat/etTrans1.rds

tests/testthat/test-ui-bounds-err.R tests/testthat/test-rxode-issue-982.R tests/testthat/test-model-rate.R tests/testthat/test-dplyr.R tests/testthat/test-000-modelVars.R tests/testthat/test-symplectic-solvers.R tests/testthat/test-as-ini.R tests/testthat/helper-methods.R tests/testthat/test-pkg-exported-funs.R

tests/testthat/nodup-keep-ev.rds

tests/testthat/keep-756.rds

tests/testthat/test-multisim-shared-event-oob.R tests/testthat/test-rxode-issue-299.R tests/testthat/test-fixef.R tests/testthat/test-ui-solve.R tests/testthat/test-et.R tests/testthat/test-nesting.R tests/testthat/test-drop.R tests/testthat/test-multi.R tests/testthat/test-backward.R tests/testthat/test-bad-dose.R tests/testthat/test-ui-mv.R

tests/testthat/etTrans-prepfit.rds

tests/testthat/test-yeojohnson-derivative.R tests/testthat/test-omegaRse.R tests/testthat/test-omp-num-threads.R tests/testthat/test-lhs-str.R tests/testthat/test-example-3-1.R tests/testthat/test-mlogit.R

tests/testthat/test-data-setup.rds

tests/testthat/test-etTrans-1.rds

tests/testthat/test-print.R tests/testthat/test-scale.R tests/testthat/test-transit.R tests/testthat/test-ui-ini-lotri.R

tests/testthat/etTrans-drop.rds

tests/testthat/test-ar.R

tests/testthat/test-issue-393.rds

tests/testthat/test-ui-log-vs-backtransformed.R

tests/testthat/lincmt-solve-focei-sol.rds

tests/testthat/test-rxode-issue-005.R tests/testthat/test-dsl.R tests/testthat/test-zzzz-rxUse.R tests/testthat/test-ifelse.R tests/testthat/test-rxode-issue-449.R tests/testthat/test-rxode-issue-349.R tests/testthat/test-dfRep.R tests/testthat/test-etTrans.R

tests/testthat/test-etTrans-780.rds

tests/testthat/test-solver-basic.R tests/testthat/test-rxode-issue-178.R tests/testthat/test-lincmt-cmt-ref.R tests/testthat/test-nmtest.R tests/testthat/test-cvpost.R

tests/testthat/test-example-3-1.rds

tests/testthat/test-steady-state.R tests/testthat/test-mu.R tests/testthat/test-factorial.R tests/testthat/test-rxui-ctl.R tests/testthat/test-nearpd.R tests/testthat/test-llik.R tests/testthat/test-odeToLin.R tests/testthat/test-dfdy.R tests/testthat/test-ui-expit.R tests/testthat/test-ui-fix-unfix.R tests/testthat/test-dde-past.R tests/testthat/test-s3-delayed-register.R tests/testthat/test-null-assign.R tests/testthat/test-rxode-issue-169.R

tests/testthat/test-issue-169.rds

tests/testthat/test-altrep-output.R

vignettes/eventTable-output-notebook-01.png

vignettes/rxode2-syntax.Rmd

vignettes/eventTable-output-notebook-02.png

data/rxSyntaxFunctions.rda

data/rxResidualError.rda

data/rxReservedKeywords.rda

po/R-rxode2.pot

po/rxode2.pot

po/R-zh_CN.po

po/zh_CN.po

man/rxRateDur.Rd man/update.rxUi.Rd man/getBaseIniSimModel.Rd man/assertRxUi.Rd man/stat_amt.Rd man/coef.rxode2.Rd man/SELU.Rd man/rxgeom.Rd man/rxode2-set.Rd man/rxOmegaVarCovDeriv.Rd man/llikWeibull.Rd man/rxEtDispatchSolve.Rd man/rxLastCompile.Rd man/rxUiDecompress.Rd man/ELU.Rd man/rLKJ1.Rd man/rxnbinom.Rd man/dot-rxAdjointGradBuild.Rd man/rxLock.Rd man/llikGamma.Rd man/rxode2parseGetTranslation.Rd man/uppergamma.Rd man/dot-rxAdjoint.Rd man/rxDelete.Rd man/dELU.Rd man/dot-rxAdjointGradEvalC.Rd man/rxnormV.Rd man/rxUdfUiMv.Rd man/dot-collectWarnings.Rd man/rxSplitPlusQ.Rd man/rxEventTableFile.Rd man/etExpand.Rd man/rxSymInvCholCreate.Rd man/rxPp.Rd man/etTrans.Rd man/rxSymInvCholN.Rd man/getBaseSimModel.Rd man/plot.rxSolve.Rd man/lowergamma.Rd man/dot-rxLinCmtGen.Rd man/testIniDf.Rd man/rxShiny.Rd man/rxUdfUiIniLhs.Rd man/rxUdfUiEst.Rd man/rxEventSensLoadModel.Rd man/replace.Rd man/rxUiDevelop.Rd man/setCvodeLinearSolver.Rd man/rxOmegaVarCovDeriv_.Rd man/odeToLin.Rd 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man/llikNbinom.Rd man/rxode2parse.Rd man/dot-getLastIdLvl.Rd man/GELU.Rd man/print.rxode2.Rd man/dot-rxSEeqUsr.Rd man/rxGetLin.Rd man/dot-rxWithOptions.Rd man/swapMatListWithCube.Rd man/dot-rxBlankIni.Rd man/rxErrTypeCombine.Rd man/gammapInv.Rd man/logit.Rd man/rxode2.Rd man/rxLhs.Rd man/llikPois.Rd man/rxValidate.Rd man/rxS.Rd man/rxRawToC.Rd man/dot-udfEnvSet.Rd man/llikGeom.Rd man/dot-solComp2.Rd man/rxUdfUiParsing.Rd man/rxunif.Rd man/rxTrans.Rd man/binomProbs.Rd man/rxRmvn.Rd man/dot-iniGetAppendArg.Rd man/dot-rxAdjointGradPop.Rd man/rxRepR0_.Rd man/rxStateOde.Rd man/rxEvid.Rd man/rxDfdy.Rd man/rxHtml.Rd man/rxSetSilentErr.Rd man/llikExp.Rd man/linMod.Rd man/dot-handleSingleErrTypeNormOrTFoceiBase.Rd man/rxIsCurrent.Rd man/rxUdfUiIniDf.Rd man/obs.Rd man/dot-rxSensStrippable.Rd man/modelExtract.Rd man/dot-udfMd5Info.Rd man/rxCondition.Rd man/rxEventSensDeactivate.Rd man/erf.Rd man/phantom.Rd man/rxParsePred.Rd man/rxSolveFree.Rd man/rxSetIni0.Rd man/rxDynLoad.Rd man/softplus.Rd man/mlogit.Rd man/genShinyApp.template.Rd man/rxSetProgressBar.Rd man/rxCreateCache.Rd man/dot-udfCallFunArg.Rd man/rxf.Rd man/rxForget.Rd man/dot-rxMemoisedFns.Rd man/gammaq.Rd man/dot-extraC.Rd man/dot-rxode2ptrs.Rd man/head.rxSolveOom.Rd man/assertVariableNew.Rd man/rxModelVars.Rd man/rxLoadState.Rd man/rxAppendModel.Rd man/rxIntToLetter.Rd man/dot-rxSens.Rd man/dot-rxDiscreteAdjointBuild.Rd man/dot-udfEnvSetUdf.Rd man/assertCompartmentName.Rd man/rxClean.Rd man/rxExpandSens3_.Rd man/rxParsePk.Rd man/dot-matchesLangTemplate.Rd man/rxSetProd.Rd man/rxWithSeed.Rd man/rxt.Rd man/rxC.Rd man/ini-set.Rd man/rxProgress.Rd man/dot-rxGetSeed.Rd man/odeMethodToInt.Rd man/dot-rxGetPredictionFTransform.Rd man/dlReLU.Rd man/rxSaveState.Rd man/dot-rxWithWd.Rd man/dot-s3register.Rd man/rxD.Rd man/gammaqInv.Rd man/rxModels_.Rd man/rxMd5.Rd man/dot-rxPastBaseLinesFromEnv.Rd man/rxExpandGrid_.Rd man/assertCompartmentNew.Rd man/rxTempDir.Rd man/llikUnif.Rd man/model.Rd man/dot-rxLinNcmt.Rd man/dot-rxDiscreteForwardSens.Rd man/rxbeta.Rd man/findLhs.Rd man/rxSuppressMsg.Rd man/rxResidualError.Rd man/fixef.rxUi.Rd man/rxUdfUiReset.Rd man/as.data.table.rxEt.Rd man/rxIndLinStrategy.Rd man/rxUiGet.Rd man/rxSetControl.Rd man/dot-cbindOme.Rd man/dot-rxSetSeed.Rd man/rxSolveAdjoint.Rd man/model-set.Rd man/llikBinom.Rd man/dot-getErrDist.Rd man/as.arrow.Rd man/rxParseSuppressMsg.Rd man/forderForceBase.Rd man/dot-minfo.Rd man/dot-pipeRx.Rd man/assertCompartmentExists.Rd man/evid_.Rd man/dot-rxIsLinCmt.Rd man/dot-iniHandleLine.Rd man/dot-assertRenameErrorModelLine.Rd man/dot-clearPipe.Rd man/rxMemoryEstimate.Rd man/mexpit.Rd man/rxOldQsDes.Rd man/infuseDur.Rd man/rxDynUnload.Rd man/rxUdfUiNum.Rd man/rxChain.Rd man/as.et.Rd man/rxExpandSens_.Rd man/dot-rxAdjointModel.Rd man/dot-vecDf.Rd man/dSwish.Rd man/PReLU.Rd man/dot-rxGetLambdaFromPred1AndIni.Rd man/rxIsDense.Rd man/dot-rxAdjointGrad.Rd man/rxMemSummary.Rd man/rxFun.Rd man/rxUdfUiData.Rd man/rxSetupScale.Rd man/add.dosing.Rd 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man/rxGetSeed.Rd man/rxDerived.Rd man/dot-rxAdjointMethodStiff.Rd man/rxUse.Rd man/rxRename.Rd man/rmdhunks/rxode2-cmt-preassign-1.Rmd man/rmdhunks/rxode2-create-models.Rmd man/rmdhunks/rxode2-cmt-preassign-2.Rmd man/rmdhunks/rxode2-cmt-assign.Rmd man/rmdhunks/rxode2-syntax-hunk.Rmd man/rmdhunks/rxode2-intro-chunk.Rmd

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