API for salmonMSE
Management Strategy Evaluation for Salmon Species

Global functions
.AHA	Source code
.AHA_loop	Source code
.AHA_wrapper	Source code
.CM_ER	Man page Source code
.CM_ERage	Man page Source code
.CM_MSY	Man page Source code
.CM_Sgen	Source code
.CM_Srep	Man page Source code
.CM_prod	Man page Source code
.CM_statevarage	Source code
.CM_ts	Source code
.broodtake_func	Man page Source code
.calc_Sgen	Source code
.calc_eq	Source code
.egg_func	Man page Source code
.plot_LHG	Source code
.yearling_func	Man page Source code
AHA	Man page Source code
Bio-class	Man page
CM2SOM	Man page Source code
CM_CWT_ER	Man page Source code
CM_CWTrel	Source code
CM_ER	Man page Source code
CM_F	Man page Source code
CM_M	Man page Source code
CM_MSY	Man page Source code
CM_Megg	Man page Source code
CM_Njuv	Man page Source code
CM_SRR	Man page Source code
CM_Sgen	Man page Source code
CM_Srep	Man page Source code
CM_covariate	Man page Source code
CM_data	Source code
CM_esc	Man page Source code
CM_fit_CWTcatch	Man page Source code
CM_fit_CWTesc	Man page Source code
CM_fit_esc	Man page Source code
CM_fit_pHOS	Man page Source code
CM_int	Man page Source code
CM_maturity	Man page Source code
CM_pairs	Man page Source code
CM_prod	Man page Source code
CM_recr	Man page Source code
CM_surv	Man page Source code
CM_surv2	Man page Source code
CM_trace	Man page Source code
CM_ts_origin	Source code
CM_vul	Man page Source code
CM_wt	Man page Source code
CM_wto	Man page Source code
CMfigures	Man page
CY2BY	Source code
Deprecated	Man page
Effort_solver	Man page Source code
FW_func	Source code
F_solver	Source code
Habitat-class	Man page
Harvest-class	Man page
Hatchery-class	Man page
Historical-class	Man page
NAor0	Source code
PNI50	Man page Source code
PNI80	Man page Source code
P_PNI50	Man page Source code
P_PNI80	Man page
P_SMSY80	Man page
P_SMSY85	Man page Source code
P_Sgen100	Man page Source code
P_WILD50	Man page Source code
ProjectSOM	Man page Source code
ProjectSOM_parallel	Source code
SMSE-class	Man page
SMSY85	Man page Source code
SOM	Man page
SOM-class	Man page
Sgen100	Man page Source code
WILD50	Man page Source code
brood_func	Man page Source code
calc_AEQ	Source code
calc_Ford_fitness	Source code
calc_MSY	Man page Source code
calc_SRR	Man page Source code
calc_SRRpars	Man page Source code
calc_Sgen	Man page Source code
calc_Sgen_Ricker	Man page Source code
calc_Smsy_Ricker	Man page Source code
calc_Umsy_Ricker	Man page Source code
calc_broodtake	Man page Source code
calc_broodtake_custom	Man page Source code
calc_fitness	Source code
calc_phi	Man page Source code
calc_pwild	Man page Source code
calc_pwild_age	Man page Source code
calc_ref	Man page Source code
calc_smolt	Man page Source code
calc_spawners	Man page Source code
calc_survival	Source code
calc_yearling	Man page Source code
calc_zbar	Man page Source code
catch_fn	Source code
catch_func	Man page Source code
check_SOM	Man page Source code
check_array	Source code
check_data	Source code
check_maxage	Source code
check_maxage2array	Source code
check_maxage2garray	Source code
check_maxage2matrix	Source code
check_numeric	Source code
check_numeric2nsim	Source code
check_simpleSOM	Source code
compare	Man page Source code
compare_escapement	Man page Source code
compare_fitness	Man page Source code
compare_spawners	Man page Source code
compare_statevar_hist	Man page Source code
compare_statevar_ts	Man page Source code
define_SRRpars	Man page Source code Source code
define_fitness_args	Man page Source code Source code
define_habitat_args	Man page Source code Source code
define_hatchery_args	Man page Source code Source code
expand_array	Source code
fit_CM	Man page Source code
fitness_func	Man page Source code
get_CMdata	Man page Source code
get_F	Man page Source code
get_report	Man page Source code
get_statevar	Source code
glossary	Man page
hist.numeric	Source code
make_CM_table	Source code
make_CMpars	Source code
make_SRR	Source code
make_bounds	Source code
make_fitness_table	Source code
make_harvest_table	Source code
make_hatchery_table	Source code
make_map	Source code
make_rmd_compare	Source code
make_rmd_stock	Source code
make_rmd_stock_comparison	Source code
matplot	Source code
multi_SOM	Man page
nextgen_SRR_func	Man page Source code
nextgen_habitat_func	Man page Source code
plot.default	Source code
plot_Kobe	Man page Source code
plot_LHG	Man page Source code
plot_Mjuv_LHG	Source code
plot_Mjuv_RS	Source code
plot_RS	Man page Source code
plot_SOM	Source code
plot_SRR	Source code
plot_decision_table	Man page Source code
plot_decision_table2	Man page Source code
plot_escapement	Man page Source code
plot_fishery	Man page Source code
plot_fitness	Man page Source code
plot_spawners	Man page Source code
plot_statevar_hist	Man page Source code
plot_statevar_ts	Man page Source code
plot_stray	Source code
plot_tradeoff	Man page Source code
report	Man page
report,SMSE-method	Man page
report_CM	Man page Source code
rmd_fishery	Source code
rmd_hatchery_production	Source code
rmd_lhg	Source code
rmd_natural_production	Source code
rmd_rs	Source code
salmonMSE	Man page Source code
salmonMSE_env	Man page
sample_CM	Man page Source code
simpleSOM	Man page
simpleSOM-class	Man page
simple_SOM	Man page
simple_salmonMSE	Man page Source code
split_sims	Source code
squeeze	Source code
stray_func	Man page Source code
update_S4	Source code