plot_LHG: Plot life history groups and release strategies

In salmonMSE: Management Strategy Evaluation for Salmon Species

Plot life history groups and release strategies

Description

Plot the annual proportions of life history groups (natural origin fish) or release strategies (hatchery origin) at various life stages

Usage

plot_LHG(
  SMSE,
  var = "NOS",
  type = c("prop", "abs"),
  s = 1,
  FUN = median,
  figure = TRUE,
  xlab = "Projection Year",
  ylab,
  name,
  ylim
)

plot_RS(
  SMSE,
  var = "HOS",
  type = c("prop", "abs"),
  s = 1,
  FUN = median,
  figure = TRUE,
  xlab = "Projection Year",
  ylab,
  name,
  ylim
)

Arguments

SMSE	Class SMSE object returned by salmonMSE()
var	Character. Slot for the state variables in SMSE@Misc$LHG[[1]] or SMSE@Misc$RS[[1]].
type	Character to indicate whether to plot proportion or absolute numbers
s	Integer. Population index for multi-population model (e.g., s = 1 is the first population in the model)
FUN	Summarizing function across simulations, typically median() or mean()
figure	Logical, whether to generate a figure (set to FALSE if only using the function to return the data matrix)
xlab	Character. Name of time variable for the figure
ylab	Character. Name of the state variable for the figure
name	Character. Vector of names for the life history groups or release strategies
ylim	Vector length 2, y-axis limits

Value

Base graphics figure, barplot of distribution or total numbers by LHG or RS. Returns invisibly the matrix of plotted values

See Also

plot_statevar_ts()

salmonMSE documentation built on Aug. 20, 2026, 5:09 p.m.