Cluster_Stats_All_Samples: Calculate Cluster Stats

In scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Calculate Cluster Stats

Description

Calculates both overall and per sample cell number and percentages per cluster based on orig.ident.

Usage

Cluster_Stats_All_Samples(
  seurat_object,
  group_by_var = deprecated(),
  group.by = "orig.ident",
  order_by_freq = TRUE
)

Arguments

seurat_object	Seurat object name.
group_by_var	soft-deprecated. See group.by.
group.by	meta data column to classify samples (default = "orig.ident").
order_by_freq	logical, whether the data.frame should be ordered by frequency of identity (default; TRUE), or by cluster/fector order (FALSE).

Value

A data.frame with rows in order of frequency or cluster order

Examples

## Not run: 
stats <- Cluster_Stats_All_Samples(seurat_object = object, group.by = "orig.ident")

## End(Not run)

scCustomize documentation built on Aug. 26, 2025, 9:08 a.m.