TCR.ContigList: Converting 10X genomics produced T cell contigs file(s) as a...
In scImmuneGraph: Visualize the Basic Characteristics of Single-Cell Immune Repertoire
Description
Usage
Arguments
Value
Examples
View source: R/TCR.ContigList.R
Description
Converting 10X genomics produced T cell contigs file(s) as a list outputed
Usage
1
TCR.ContigList(datasetDir, sampleName, groupName)
Arguments
datasetDir
The single-cell samples' directory containing file filtered_contig_annotations.csv.
sampleName
The sample name of single cell sample.
groupName
The group name of single cell sample.
Value
List of clonotypes for individual cell barcodes.
Examples
1
2
3
4
5
project_data_dir <- "F:/R_Language/data/tcr"
sample_name <- list.dirs(project_data_dir, full.names = FALSE, recursive = FALSE)
group_name <- c("A", "A", "B", "B")
TCR.ContigList(project_data_dir, sample_name, group_name)
scImmuneGraph documentation built on Dec. 10, 2021, 5:11 p.m.
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Description Usage Arguments Value Examples
View source: R/TCR.ContigList.R
Description
Converting 10X genomics produced T cell contigs file(s) as a list outputed
Usage
1 | TCR.ContigList(datasetDir, sampleName, groupName)
|
Arguments
datasetDir |
The single-cell samples' directory containing file filtered_contig_annotations.csv. |
sampleName |
The sample name of single cell sample. |
groupName |
The group name of single cell sample. |
Value
List of clonotypes for individual cell barcodes.
Examples
1 2 3 4 5 | project_data_dir <- "F:/R_Language/data/tcr"
sample_name <- list.dirs(project_data_dir, full.names = FALSE, recursive = FALSE)
group_name <- c("A", "A", "B", "B")
TCR.ContigList(project_data_dir, sample_name, group_name)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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