TCR.top100CDR3Abundance: #' Get the 100 most abundant CDR3

In scImmuneGraph: Visualize the Basic Characteristics of Single-Cell Immune Repertoire

Description

#' Get the 100 most abundant CDR3

Usage

TCR.top100CDR3Abundance(contigList, sampleName)

Arguments

contigList	The product of TCR.ContigList().
sampleName	The sample name of single cell sample.

Value

Multiple pictures in the form of a list.

Examples

project_data_dir <- "F:/R_Language/data/tcr"
sample_name <- list.dirs(project_data_dir, full.names = FALSE, recursive = FALSE)
group_name <- c("A", "A", "B", "B")
contig_list <- TCR.ContigList(project_data_dir, sample_name, group_name)

BasicPlot(TCR.top100CDR3Abundance, contig_list, sample_name)

scImmuneGraph documentation built on Dec. 10, 2021, 5:11 p.m.