basic_filter: basic_filter
In scRNAstat: A Pipeline to Process Single Cell RNAseq Data
Description
Usage
Arguments
Value
Examples
Description
filter the genes which show expression less than 3 cells.
filter the cells which percent_mito < 25 & percent_ribo > 3 & percent_hb < 10
filter the cells which nFeature_RNA > 300 & nFeature_RNA < 8000
Usage
1
basic_filter(sce)
Arguments
sce
An object of class Seurat
Value
sce.all.filt An object of class Seurat
Examples
1
scRNAstat documentation built on Sept. 22, 2021, 9:07 a.m.
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Description Usage Arguments Value Examples
Description
filter the genes which show expression less than 3 cells. filter the cells which percent_mito < 25 & percent_ribo > 3 & percent_hb < 10 filter the cells which nFeature_RNA > 300 & nFeature_RNA < 8000
Usage
1 | basic_filter(sce)
|
Arguments
sce |
An object of class Seurat |
Value
sce.all.filt An object of class Seurat
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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