basic_find_markers: Basic Find Markers
In scRNAstat: A Pipeline to Process Single Cell RNAseq Data
View source: R/basic_find_markers.R
basic_find_markers R Documentation
Basic Find Markers
Description
To find de 'novo' markers by 'FindAllMarkers' from Seurat with default setting.
Usage
basic_find_markers(sce, group = "seurat_clusters", dir = ".")
Arguments
sce
An object of class Seurat
group
default:seurat_clusters, you can change it to celltype
dir
path for saving results
Value
sce.markers a data.frame of markers.
Examples
basic_find_markers(AJ064_small_last_sce,dir=tempdir())
scRNAstat documentation built on May 15, 2026, 9:06 a.m.
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View source: R/basic_find_markers.R
| basic_find_markers | R Documentation |
Basic Find Markers
Description
To find de 'novo' markers by 'FindAllMarkers' from Seurat with default setting.
Usage
basic_find_markers(sce, group = "seurat_clusters", dir = ".")
Arguments
sce |
An object of class Seurat |
group |
default:seurat_clusters, you can change it to celltype |
dir |
path for saving results |
Value
sce.markers a data.frame of markers.
Examples
basic_find_markers(AJ064_small_last_sce,dir=tempdir())
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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