basic_markers: Basic Markers

In scRNAstat: A Pipeline to Process Single Cell RNAseq Data

Description

Basic Markers

Usage

basic_markers(sce, org = "human", group = "orig.ident", dir = ".")

Arguments

sce	An object of class Seurat
org	human or mouse, default: human
group	default:'orig.ident', you can change it to 'seurat_clusters' or 'celltype'
dir	the path for saving the figures by 'DotPlot' with known famous markers.

Value

a list of figures by 'DotPlot'

Examples

basic_markers(AJ064_small_last_sce,dir=tempdir())

scRNAstat documentation built on Sept. 22, 2021, 9:07 a.m.