basic_markers: Basic Markers
In scRNAstat: A Pipeline to Process Single Cell RNAseq Data
View source: R/basic_markers.R
basic_markers R Documentation
Basic Markers
Description
Basic Markers
Usage
basic_markers(sce, org = "human", group = "orig.ident", dir = ".")
Arguments
sce
An object of class Seurat
org
human or mouse, default: human
group
default:'orig.ident', you can change it to 'seurat_clusters' or 'celltype'
dir
the path for saving the figures by 'DotPlot' with known famous markers.
Value
a list of figures by 'DotPlot'
Examples
basic_markers(AJ064_small_last_sce,dir=tempdir())
scRNAstat documentation built on May 15, 2026, 9:06 a.m.
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View source: R/basic_markers.R
| basic_markers | R Documentation |
Basic Markers
Description
Basic Markers
Usage
basic_markers(sce, org = "human", group = "orig.ident", dir = ".")
Arguments
sce |
An object of class Seurat |
org |
human or mouse, default: human |
group |
default:'orig.ident', you can change it to 'seurat_clusters' or 'celltype' |
dir |
the path for saving the figures by 'DotPlot' with known famous markers. |
Value
a list of figures by 'DotPlot'
Examples
basic_markers(AJ064_small_last_sce,dir=tempdir())
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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