Man pages for scaRabee
Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
| bound.parameters | Forces parameter estimates between defined boundaries. |
| compute.secondary | Computes secondary parameter values |
| convert.infusion | Process Infusion Information |
| dde.model | Delay Differential Equations |
| dde.utils | Utility Functions for Delay Differential Equation Systems |
| estimation.plot | Create Summary Estimation Plots |
| examples.data | Datasets for scaRabee demo. |
| explicit.model | Explicit Equations |
| finalize.grid.report | Finalize Direct Grid Search Report |
| finalize.report | Finalize Estimation Report |
| fitmle | Maximum Likelihood Estimator |
| fitmle.cov | Computation of the Covariance Matrix |
| get.cov.matrix | Computation of the Covariance Matrix |
| get.events | Create events from bolus dosing records. |
| get.layout | Layout for Lattice Functions |
| get.parms.data | Extract data from scaRabee parameter table |
| get.secondary | Computation of Secondary Parameter Estimates |
| initialize.report | Initialize Report Files |
| ode.model | Ordinary Differential Equations |
| ode.utils | Utility Functions for Ordinary Differential Equation Systems |
| order.parms.list | Sort a scaRabee parameter table |
| pder | Compute Matrix of Partial Derivatives |
| problem.eval | Evaluation of structural and residual variability models |
| residual.report | Creation of Prediction & Residual Report |
| scarabee.analysis | Run a scaRabee Analysis |
| scarabee.check.model | Check scaRabee Models |
| scarabee.check.reserved | Check for Reserved Variable Names |
| scarabee.clean | Cleaning of the Run Directory |
| scarabee.directory | Creation of the Run Directory |
| scarabee.gridsearch | Direct Grid Search Utility |
| scarabee.new | Create a scaRabee Analysis Folder |
| scaRabee-package | scaRabee toolkit |
| scarabee.read.data | Read scaRabee Data File |
| scarabee.read.model | Read scaRabee Model File |
| scarabee.read.parms | Read scaRabee Parameter File |
| simulation.plot | Create Simulation Plots |
| simulation.report | Simulations |
| weighting | Residual Variability |
