View source: R/scanstatistics_general.R
| mc_pvalue | R Documentation |
p-value for a scan statistic.Given an observed scan statistic \lambda^* and a vector of replicate
scan statistics \lambda_i, i=1,\ldots,R, calculate the Monte
Carlo p-value as
\frac{1 + \sum_{i=1}^R \mathrm{I}(\lambda_i > \lambda^*)}{1 + R}
The function is vectorized, so multiple p-values can be calculated if
several scan statistics (e.g. statistics from secondary clusters) are
supplied.
mc_pvalue(observed, replicates)
observed |
A scalar containing the observed value of the scan statistic, or a vector of observed values from secondary clusters. |
replicates |
A vector of Monte Carlo replicates of the scan statistic. |
The p-value or p-values corresponding to the observed
scan statistic(s).
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