R/psi.R

In seacarb: Seawater Carbonate Chemistry

# Copyright (C) 2009 Jean-Pierre Gattuso
#
# This file is part of seacarb.
#
# Seacarb is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
#
# Seacarb is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with seacarb; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
#
"psi" <-
function(flag, var1, var2, S=35, T=20, Patm=1, P=0, Pt=0, Sit=0, pHscale="T", kf="x", k1k2="x", ks="d", eos="eos80", long=1.e20, lat=1.e20){
  # if the concentrations of total silicate and total phosphate are NA
  # they are set at 0
  Sit[is.na(Sit)] <- 0
  Pt[is.na(Pt)] <- 0
  
  buf <- buffer(flag=flag, var1=var1, var2=var2, S=S, T=T, Patm=Patm, P=P, Pt=Pt, Sit=Sit, pHscale=pHscale, kf=kf, k1k2=k1k2, ks=ks, eos=eos, long=long, lat=lat)
	psi <- -buf$PiC/buf$PiD
out <- psi
attr(out,"unit") <- "mol CO2/mol CaCO3"
return(out)
}