This package provides regularization paths for the lasso, (fitted) group lasso, and (fitted) sparse-group lasso. The underlying mathematical model is a mixed model, i.e., a model with fixed and random effects. (Whereas it is actually optional to include any fixed effect.)

The (fitted) sparse-group lasso contains two penalty terms, which are combined via a mixing parameter 0 <= alpha <= 1. Thus, if the parameter is set to either 1 or 0, the resulting regularization operator is the lasso or the (fitted) group lasso, respectively.

Key features:


To get the current release version from CRAN, please type:


To get the current development version from github, please type:

# install.packages("devtools")


A data set is included and can be loaded:


Furthermore, the following functions are available to the user:


Please load the data as shown in the section above and get started:

## Call the lasso:
fit_l <- seagull(y = phenotypes[, 1], Z = genotypes, alpha = 1)

## Call the group lasso:
fit_gl <- seagull(y = phenotypes[, 1], Z = genotypes, groups = groups, alpha = 0)

## Call the sparse-group lasso:
fit_sgl <- seagull(y = phenotypes[, 1], Z = genotypes, groups = groups)

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seagull documentation built on April 20, 2021, 5:06 p.m.