genotypes: Simulated genotypes
In seagull: Lasso, Group Lasso, and Sparse-Group Lasso for Mixed Models
Description
Usage
Format
Author(s)
Description
A genotype matrix that contains information from single
nucleotide polymorphisms (SNPs). Dimensions are 1000 rows, 466 columns. The
data was simulated using the software
AlphaSim of which an R-package
is available. Each row corresponds to a single individual. 1000 individuals
were simulated, where 10 half sib families were created. Each family consists
of 100 half sibs. The half sibs share a common Sire. 466 SNPs are available,
distributed over 2 chromosomes to an equal amount, i.e., the first 233 SNPs
are located on chromosome 1, the remaining SNPs are on the second chromosome.
The complementary homozygote genotypes are coded as 0 and 2, respectively.
The heterozygote genotype as 1.
Usage
1
Format
A matrix with 1000 rows and 466 columns. One row per individual.
One column per SNP.
Author(s)
Jan Klosa klosa@fbn-dummerstorf.de
seagull documentation built on April 20, 2021, 5:06 p.m.
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Description Usage Format Author(s)
Description
A genotype matrix that contains information from single nucleotide polymorphisms (SNPs). Dimensions are 1000 rows, 466 columns. The data was simulated using the software AlphaSim of which an R-package is available. Each row corresponds to a single individual. 1000 individuals were simulated, where 10 half sib families were created. Each family consists of 100 half sibs. The half sibs share a common Sire. 466 SNPs are available, distributed over 2 chromosomes to an equal amount, i.e., the first 233 SNPs are located on chromosome 1, the remaining SNPs are on the second chromosome. The complementary homozygote genotypes are coded as 0 and 2, respectively. The heterozygote genotype as 1.
Usage
1 |
Format
A matrix with 1000 rows and 466 columns. One row per individual. One column per SNP.
Author(s)
Jan Klosa klosa@fbn-dummerstorf.de
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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