API for selection.index
Analysis of Selection Index in Plant Breeding
| Global functions | |
|---|---|
| .adjust_genotypic_matrix | Source code |
| .adjust_phenotypic_matrix | Source code |
| .calculate_anova | Source code |
| .calculate_varcov | Source code |
| .cochran_adjustment | Source code |
| .cochran_adjustment_genomic | Source code |
| .combined_index_metrics | Source code |
| .compute_genetic_values | Source code |
| .compute_phenotypes | Source code |
| .create_initial_population | Source code |
| .eigen_index_metrics | Source code |
| .esim_solve_sym_multi | Source code |
| .generate_offspring | Source code |
| .genomic_eigen_index_metrics | Source code |
| .genomic_index_correlation | Source code |
| .genomic_index_metrics | Source code |
| .genomic_stage_metrics | Source code |
| .gesim_leading_eigenvector | Source code |
| .gesim_solve_sym_multi | Source code |
| .index_correlation | Source code |
| .index_metrics | Source code Source code |
| .leading_eigenvector | Source code |
| .recombine_haplotypes | Source code |
| .solve_sym_multi | Source code Source code |
| .stage_metrics | Source code |
| .young_intensities | Source code |
| .young_selection_intensities | Source code |
| base_index | Man page Source code |
| clgsi | Man page Source code |
| constants | Man page |
| constrained_genomic_indices | Man page |
| constrained_indices | Man page |
| correction_factor | Source code |
| cpp_correction_factor | Source code |
| cpp_correction_factor_matrix | Source code |
| cpp_crossprod_divided | Source code |
| cpp_extract_submatrix | Source code |
| cpp_extract_vector | Source code |
| cpp_genotype_means | Source code |
| cpp_grand_means | Source code |
| cpp_grouped_sum_of_products | Source code |
| cpp_grouped_sums | Source code |
| cpp_math_primitives | Man page |
| cpp_mean_squares | Source code |
| cpp_multi_grouped_sums | Source code |
| cpp_quadratic_form | Source code |
| cpp_quadratic_form_sym | Source code |
| cpp_symmetric_solve | Source code |
| cpp_total_sum_of_products | Source code |
| cpp_trait_minmax | Source code |
| cpp_wrappers | Man page |
| cppg_lgsi | Man page Source code |
| crlgsi | Man page Source code |
| design_stats | Source code |
| design_stats_api | Source code |
| dg_lpsi | Man page Source code |
| eigen_indices | Man page |
| esim | Man page Source code |
| estimate_missing_values | Man page Source code |
| gen_advance | Man page Source code |
| gen_varcov | Man page Source code |
| genetic_genomic_varcov | Man page Source code |
| genomic-varcov | Man page |
| genomic_eigen_indices | Man page |
| genomic_indices | Man page |
| genomic_varcov | Man page Source code |
| genotype_means | Source code |
| gesim | Man page Source code |
| grouped_sum_of_products | Source code |
| grouped_sums | Source code |
| gw_esim | Man page Source code |
| gw_lmsi | Man page Source code |
| haldane_mapping | Man page Source code |
| inverse_haldane_mapping | Man page Source code |
| is_symmetric | Source code |
| is_zero | Source code |
| lgsi | Man page Source code |
| lmsi | Man page Source code |
| lpsi | Man page Source code |
| maize_geno | Man page |
| maize_pheno | Man page |
| marker_indices | Man page |
| mean_performance | Man page Source code |
| mean_squares | Source code |
| mesim | Man page Source code |
| missing-value | Man page |
| missing_value_estimation | Source code |
| mlgsi | Man page Source code |
| mlpsi | Man page Source code |
| mppg_lgsi | Man page Source code |
| mppg_lpsi | Man page Source code |
| mrlgsi | Man page Source code |
| mrlpsi | Man page Source code |
| multistage_genomic_indices | Man page |
| multistage_phenotypic_indices | Man page |
| phen_varcov | Man page Source code |
| phenomic_genomic_varcov | Man page Source code |
| phenotypic_indices | Man page |
| plot.selection_simulation | Man page Source code |
| ppg_esim | Man page Source code |
| ppg_gesim | Man page Source code |
| ppg_lgsi | Man page Source code |
| ppg_lpsi | Man page Source code |
| predict_selection_score | Man page Source code |
| print.base_index | Man page Source code |
| print.dg_lpsi | Man page Source code |
| print.esim | Man page Source code |
| print.gesim | Man page Source code |
| print.gw_esim | Man page Source code |
| print.gw_lmsi | Source code |
| print.lmsi | Source code |
| print.mesim | Man page Source code |
| print.ppg_esim | Man page Source code |
| print.ppg_gesim | Man page Source code |
| print.resim | Man page Source code |
| print.rgesim | Man page Source code |
| print.selection_simulation | Man page Source code |
| print.smith_hazel | Man page Source code |
| quadratic_form | Source code |
| quadratic_form_sym | Source code |
| resim | Man page Source code |
| rgesim | Man page Source code |
| rlgsi | Man page Source code |
| rlpsi | Man page Source code |
| seldata | Man page |
| selection.index | Man page |
| selection.index-package | Man page |
| simulate_selection_cycles | Man page Source code |
| smith_hazel | Man page Source code |
| stochastic_simulation | Man page |
| summary.base_index | Man page Source code |
| summary.dg_lpsi | Man page Source code |
| summary.esim | Man page Source code |
| summary.gesim | Man page Source code |
| summary.gw_esim | Man page Source code |
| summary.mesim | Man page Source code |
| summary.ppg_esim | Man page Source code |
| summary.ppg_gesim | Man page Source code |
| summary.resim | Man page Source code |
| summary.rgesim | Man page Source code |
| summary.selection_simulation | Man page Source code |
| summary.smith_hazel | Man page Source code |
| symmetric_solve | Source code |
| total_sum_of_products | Source code |
| validate_design_args | Source code |
| validate_indices | Source code |
| warn_pairwise_psd | Source code |
| weight | Man page |
| weight_mat | Man page Source code |
