Files in selection.index

Analysis of Selection Index in Plant Breeding

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/design_stats.R R/multistage_genomic_indices.R R/genomic.R R/varcov.R R/mean_performance.R R/genomic_indices.R R/helpers-validation.R R/gen_advance.R R/cpp_wrappers.R R/genomic_eigen_indices.R R/data.R R/missing_value.R R/stochastic_simulation.R R/phenotypic_indices.R R/missing_value_estimation.R R/weight_mat.R R/multistage_phenotypic_indices.R R/constants.R R/marker_indices.R R/selection.index-package.R R/constrained_indices.R R/anova_helpers.R R/predict_selection_score.R R/constrained_genomic_indices.R R/eigen_indices.R

src/math_primitives.cpp

src/RcppExports.cpp

inst/WORDLIST

inst/doc/linear-phenotypic-eigen-selection-index-methods.Rmd inst/doc/constrained-linear-phenotypic-selection-indices.Rmd inst/doc/constrained-linear-phenotypic-selection-indices.R inst/doc/linear-genomic-eigen-selection-index-methods.R inst/doc/linear-phenotypic-selection-index.Rmd

inst/doc/linear-marker-selection-indices.html

inst/doc/constrained-linear-phenotypic-selection-indices.html

inst/doc/linear-marker-selection-indices.Rmd inst/doc/getting-started.R

inst/doc/linear-genomic-selection-indices.html

inst/doc/linear-genomic-eigen-selection-index-methods.html

inst/doc/linear-phenotypic-eigen-selection-index-methods.html

inst/doc/linear-genomic-selection-indices.Rmd inst/doc/stochastic-simulation-linear-phenotypic-indices.Rmd inst/doc/linear-genomic-eigen-selection-index-methods.Rmd inst/doc/constrained-linear-genomic-selection-indices.R

inst/doc/stochastic-simulation-linear-phenotypic-indices.html

inst/doc/constrained-linear-genomic-selection-indices.Rmd inst/doc/multistage-linear-selection-indices.Rmd

inst/doc/constrained-linear-genomic-selection-indices.html

inst/doc/stochastic-simulation-linear-phenotypic-indices.R

inst/doc/getting-started.html

inst/doc/linear-marker-selection-indices.R

inst/doc/multistage-linear-selection-indices.html

inst/doc/linear-phenotypic-selection-index.R inst/doc/linear-phenotypic-eigen-selection-index-methods.R inst/doc/multistage-linear-selection-indices.R inst/doc/linear-genomic-selection-indices.R inst/doc/getting-started.Rmd

inst/doc/linear-phenotypic-selection-index.html

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-gen_advance.R tests/testthat/test-eigen_indices.R tests/testthat/test-multistage_phenotypic_indices.R tests/testthat/test-helpers_validation.R tests/testthat/test-genphen.R tests/testthat/test-cpp_math_primitives.R tests/testthat/test-predict_selection_score.R tests/testthat/test-missing_value_estimation.R tests/testthat/test-lpsi.R tests/testthat/Rplots.pdf tests/testthat/test-multistage_genomic_indices.R tests/testthat/test-constrained_indices.R tests/testthat/test-cpp_wrappers.R tests/testthat/test-mean_performance.R tests/testthat/test-stochastic_simulation.R tests/testthat/test-marker_indices.R tests/testthat/test-weight_mat.R tests/testthat/test-genomic_eigen_indices.R tests/testthat/test-design_stats.R tests/testthat/test-constrained_genomic_indices.R tests/testthat/test-missing_value.R tests/testthat/test-anova_helpers.R tests/testthat/test-genomic_indices.R tests/testthat/test-phenotypic_indices.R tests/testthat/test-genomic_varcov.R vignettes/linear-phenotypic-eigen-selection-index-methods.Rmd vignettes/constrained-linear-phenotypic-selection-indices.Rmd vignettes/linear-phenotypic-selection-index.Rmd vignettes/linear-marker-selection-indices.Rmd vignettes/linear-genomic-selection-indices.Rmd vignettes/stochastic-simulation-linear-phenotypic-indices.Rmd vignettes/linear-genomic-eigen-selection-index-methods.Rmd vignettes/constrained-linear-genomic-selection-indices.Rmd vignettes/multistage-linear-selection-indices.Rmd vignettes/getting-started.Rmd

data/weight.rda

data/maize_pheno.rda

data/maize_geno.rda

data/seldata.rda

man/print.rgesim.Rd man/summary.gw_esim.Rd man/genomic_varcov.Rd man/esim.Rd man/constrained_genomic_indices.Rd man/summary.smith_hazel.Rd man/base_index.Rd man/summary.base_index.Rd man/cpp_wrappers.Rd man/cpp_math_primitives.Rd man/summary.selection_simulation.Rd man/print.gesim.Rd man/multistage_phenotypic_indices.Rd man/summary.dg_lpsi.Rd man/simulate_selection_cycles.Rd man/missing-value.Rd man/cppg_lgsi.Rd man/lpsi.Rd man/clgsi.Rd man/summary.ppg_esim.Rd man/resim.Rd man/lmsi.Rd man/maize_geno.Rd man/smith_hazel.Rd man/rlgsi.Rd man/summary.esim.Rd man/constrained_indices.Rd man/summary.resim.Rd man/summary.mesim.Rd man/genomic-varcov.Rd man/weight.Rd man/print.dg_lpsi.Rd man/mlgsi.Rd man/selection.index-package.Rd man/lgsi.Rd man/mrlgsi.Rd man/stochastic_simulation.Rd man/multistage_genomic_indices.Rd man/mrlpsi.Rd man/summary.gesim.Rd man/ppg_esim.Rd man/phen_varcov.Rd man/print.mesim.Rd man/dg_lpsi.Rd man/mppg_lpsi.Rd man/ppg_gesim.Rd man/crlgsi.Rd man/rlpsi.Rd man/gen_advance.Rd man/plot.selection_simulation.Rd man/constants.Rd man/seldata.Rd man/mlpsi.Rd man/genomic_indices.Rd man/summary.ppg_gesim.Rd man/genomic_eigen_indices.Rd man/phenotypic_indices.Rd man/print.selection_simulation.Rd man/predict_selection_score.Rd man/gen_varcov.Rd man/genetic_genomic_varcov.Rd man/gw_esim.Rd man/print.resim.Rd man/summary.rgesim.Rd man/print.base_index.Rd man/print.ppg_esim.Rd man/ppg_lpsi.Rd man/print.gw_esim.Rd man/haldane_mapping.Rd man/inverse_haldane_mapping.Rd man/marker_indices.Rd man/gw_lmsi.Rd man/mesim.Rd man/weight_mat.Rd man/gesim.Rd man/mppg_lgsi.Rd man/estimate_missing_values.Rd man/mean_performance.Rd man/phenomic_genomic_varcov.Rd man/rgesim.Rd man/print.ppg_gesim.Rd man/print.esim.Rd man/ppg_lgsi.Rd man/maize_pheno.Rd man/eigen_indices.Rd man/print.smith_hazel.Rd

selection.index documentation built on March 9, 2026, 1:06 a.m.