countfreelists: The number of free lists available and annotation lines in an...
In seqinr: Biological Sequences Retrieval and Analysis

countfreelists

R Documentation

The number of free lists available and annotation lines in an ACNUC server

Description

Returns the number of free lists available list of names of annotation lines in the opened ACNUC database.

Usage

countfreelists(socket = autosocket())
cfl(socket = autosocket())

Arguments

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

a list with the following 2 components:

`free`	numeric. The number of free lists
`annotlines`	vector of strings. Names of annotation lines

Author(s)

J.R. Lobry

References

https://doua.prabi.fr/databases/acnuc.html

citation("seqinr")

Examples

## Not run:  # Need internet connection
  choosebank("emblTP")
  (rescountfreelists <- countfreelists())
  stopifnot(all(rescountfreelists$annotlines ==
   c("ALL", "AC",  "PR",  "DT",  "KW",  "OS",  "OC",
   "OG",  "RN",  "RC",  "RP",  "RX", "RG",  "RA",  "RT",  "RL",  "DR",
   "CC",  "AH",  "AS",  "FH",  "FT",  "CO",  "SQ", "SEQ")))
  closebank()
  
## End(Not run)

seqinr documentation built on May 29, 2024, 6:36 a.m.