countsubseqs | R Documentation |
Returns the number of subsequences in the ACNUC list of rank lrank
.
countsubseqs(lrank, socket = autosocket()) css(lrank, socket = autosocket())
lrank |
the rank of the ACNUC list to consider. |
socket |
an object of class |
Numeric.
J.R. Lobry
http://doua.prabi.fr/databases/acnuc.html
citation("seqinr")
choosebank
, query
, glr
to
get a list rank from its name.
## Not run: # Need internet connection choosebank("emblTP") mylist<-query("mylist", "N=@", virtual = TRUE) # select all (seqs + subseqs) mylist$nelem # 14138094 seqs + subseqs stopifnot(mylist$nelem == 14138094) css(glr("mylist")) # 1604500 subsequences only stopifnot(css(glr("mylist")) == 1604500) closebank() ## End(Not run)
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