seroincidence: Estimating Infection Rates from Serological Data

Translates antibody levels measured in a (cross-sectional) population sample into an estimate of the frequency with which seroconversions (infections) occur in the sampled population.

AuthorPeter Teunis [aut] (Author of the method and original code), Daniel Lewandowski [com, ctb] (Creator of the R package), Chantal Quinten [ctb, cre] (Project manager and the package maintainer)
Date of publication2015-12-29 23:22:48
MaintainerChantal Quinten <seroincidence@ecdc.europa.eu>
LicenseGPL-3
Version1.0.5
http://ecdc.europa.eu/en/data-tools/seroincidence-calculator-tool/Pages/default.aspx

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Files

seroincidence
seroincidence/TODO
seroincidence/inst
seroincidence/inst/CITATION
seroincidence/inst/doc
seroincidence/inst/doc/installation.Rmd
seroincidence/inst/doc/tutorial.pdf
seroincidence/inst/doc/tutorial.R
seroincidence/inst/doc/cover.html
seroincidence/inst/doc/methodology.Rmd
seroincidence/inst/doc/installation.pdf
seroincidence/inst/doc/installation.R
seroincidence/inst/doc/tutorial.Rmd
seroincidence/inst/doc/cover.R
seroincidence/inst/doc/methodology.pdf
seroincidence/inst/doc/cover.Rmd
seroincidence/tests
seroincidence/tests/testthat.R
seroincidence/tests/testthat
seroincidence/tests/testthat/test.simulateSerologyData.R
seroincidence/NAMESPACE
seroincidence/NEWS
seroincidence/data
seroincidence/data/salmonellaSerologyData.RData
seroincidence/data/campylobacterResponseParams.RData
seroincidence/data/campylobacterSerologyData.RData
seroincidence/R
seroincidence/R/print.seroincidence.R seroincidence/R/nllGamma.R seroincidence/R/simulateSerologyData.R seroincidence/R/logRhoCdf.R seroincidence/R/logRhoPdf.R seroincidence/R/salmonellaSerologyData.R seroincidence/R/nll.R seroincidence/R/estimateSeroincidence.R seroincidence/R/campylobacterSerologyData.R seroincidence/R/seroincidence.R seroincidence/R/rinvgamma.R seroincidence/R/print.summary.seroincidence.R seroincidence/R/simulateSalmonellaResponseParams.R seroincidence/R/campylobacterResponseParams.R seroincidence/R/summary.seroincidence.R
seroincidence/vignettes
seroincidence/vignettes/installation.Rmd
seroincidence/vignettes/fig
seroincidence/vignettes/fig/ssi-cutoff2.png
seroincidence/vignettes/fig/ssi-cutoff05.png
seroincidence/vignettes/fig/RGui2.png
seroincidence/vignettes/fig/setup3.png
seroincidence/vignettes/fig/delft-cutoff0.png
seroincidence/vignettes/fig/RGui1.png
seroincidence/vignettes/fig/setup4.png
seroincidence/vignettes/fig/startMenu.png
seroincidence/vignettes/fig/RGui3.png
seroincidence/vignettes/fig/setup1.png
seroincidence/vignettes/fig/ssi-cutoff1.png
seroincidence/vignettes/fig/cutoff-salmonella-1.png
seroincidence/vignettes/fig/cutoff-campylobacter-1.png
seroincidence/vignettes/fig/delft-cutoff1.png
seroincidence/vignettes/fig/ssi-cutoff0.png
seroincidence/vignettes/fig/delft-cutoff05.png
seroincidence/vignettes/fig/delft-cutoff2.png
seroincidence/vignettes/fig/cutoff-campylobacter-2.png
seroincidence/vignettes/fig/cutoff-salmonella-2.png
seroincidence/vignettes/fig/setup2.png
seroincidence/vignettes/fig/RGui4.png
seroincidence/vignettes/fig/downloaded.png
seroincidence/vignettes/methodology.Rmd
seroincidence/vignettes/tutorial.Rmd
seroincidence/vignettes/cover.Rmd
seroincidence/README.md
seroincidence/MD5
seroincidence/build
seroincidence/build/vignette.rds
seroincidence/DESCRIPTION
seroincidence/man
seroincidence/man/campylobacterResponseParams.Rd seroincidence/man/print.seroincidence.Rd seroincidence/man/simulateSerologyData.Rd seroincidence/man/campylobacterSerologyData.Rd seroincidence/man/print.summary.seroincidence.Rd seroincidence/man/summary.seroincidence.Rd seroincidence/man/estimateSeroincidence.Rd seroincidence/man/salmonellaSerologyData.Rd seroincidence/man/simulateSalmonellaResponseParams.Rd seroincidence/man/seroincidence.Rd

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