seroincidence: Estimating Infection Rates from Serological Data

Translates antibody levels measured in a (cross-sectional) population sample into an estimate of the frequency with which seroconversions (infections) occur in the sampled population.

Install the latest version of this package by entering the following in R:
install.packages("seroincidence")
AuthorPeter Teunis [aut] (Author of the method and original code), Daniel Lewandowski [com, ctb] (Creator of the R package), Chantal Quinten [ctb, cre] (Project manager and the package maintainer)
Date of publication2015-12-29 23:22:48
MaintainerChantal Quinten <seroincidence@ecdc.europa.eu>
LicenseGPL-3
Version1.0.5
http://ecdc.europa.eu/en/data-tools/seroincidence-calculator-tool/Pages/default.aspx

View on CRAN

Files

TODO
inst
inst/CITATION
inst/doc
inst/doc/installation.Rmd
inst/doc/tutorial.pdf
inst/doc/tutorial.R
inst/doc/cover.html
inst/doc/methodology.Rmd
inst/doc/installation.pdf
inst/doc/installation.R
inst/doc/tutorial.Rmd
inst/doc/cover.R
inst/doc/methodology.pdf
inst/doc/cover.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test.simulateSerologyData.R
NAMESPACE
NEWS
data
data/salmonellaSerologyData.RData
data/campylobacterResponseParams.RData
data/campylobacterSerologyData.RData
R
R/print.seroincidence.R R/nllGamma.R R/simulateSerologyData.R R/logRhoCdf.R R/logRhoPdf.R R/salmonellaSerologyData.R R/nll.R R/estimateSeroincidence.R R/campylobacterSerologyData.R R/seroincidence.R R/rinvgamma.R R/print.summary.seroincidence.R R/simulateSalmonellaResponseParams.R R/campylobacterResponseParams.R R/summary.seroincidence.R
vignettes
vignettes/installation.Rmd
vignettes/fig
vignettes/fig/ssi-cutoff2.png
vignettes/fig/ssi-cutoff05.png
vignettes/fig/RGui2.png
vignettes/fig/setup3.png
vignettes/fig/delft-cutoff0.png
vignettes/fig/RGui1.png
vignettes/fig/setup4.png
vignettes/fig/startMenu.png
vignettes/fig/RGui3.png
vignettes/fig/setup1.png
vignettes/fig/ssi-cutoff1.png
vignettes/fig/cutoff-salmonella-1.png
vignettes/fig/cutoff-campylobacter-1.png
vignettes/fig/delft-cutoff1.png
vignettes/fig/ssi-cutoff0.png
vignettes/fig/delft-cutoff05.png
vignettes/fig/delft-cutoff2.png
vignettes/fig/cutoff-campylobacter-2.png
vignettes/fig/cutoff-salmonella-2.png
vignettes/fig/setup2.png
vignettes/fig/RGui4.png
vignettes/fig/downloaded.png
vignettes/methodology.Rmd
vignettes/tutorial.Rmd
vignettes/cover.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/campylobacterResponseParams.Rd man/print.seroincidence.Rd man/simulateSerologyData.Rd man/campylobacterSerologyData.Rd man/print.summary.seroincidence.Rd man/summary.seroincidence.Rd man/estimateSeroincidence.Rd man/salmonellaSerologyData.Rd man/simulateSalmonellaResponseParams.Rd man/seroincidence.Rd

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