Description Usage Arguments Value Examples
View source: R/summary.seroincidence.R
Calculate seroincidence from output of the seroincidence calculator
estimateSeroincidence
.
1 2 3 |
object |
A dataframe containing output of function |
... |
Additional arguments affecting the summary produced. |
quantiles |
A vector of length 2 specifying quantiles for lower (first element) and upper
(second element) bounds of |
showDeviance |
Logical flag ( |
showConvergence |
Logical flag ( |
A list with the following items:
Results
Dataframe with maximum likelihood estimate of lambda
(the
seroincidence) (column Lambda
) and corresponding lower (Lambda.lwr
) and upper
(Lambda.upr
bounds.
Optionally Deviance
(Negative log likelihood (NLL) at estimated (maximum likelihood)
lambda
) and Covergence
(Convergence indicator returned by optim
.
Value of 0 indicates convergence) columns are included.
Antibodies
Character vector with names of input antibodies used in
estimateSeroincidence
.
Strata
Character with names of strata used in estimateSeroincidence
.
CensorLimits
List of cutoffs for each of the antibodies used in
estimateSeroincidence
.
1 2 3 4 5 6 7 8 | ## Not run:
# estimate seroincidence
seroincidence <- estimateSeroincidence(...)
# calculate summary statistics for the seroincidence object
seroincidenceSummary <- summary(seroincidence)
## End(Not run)
|
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