Man pages for shapeR
Collection and Analysis of Otolith Shape Data
| cluster.plot | Plot data clusters |
| detect.outline | Detect otolith outline |
| enrich.master.list | Link information in the info.file to the coefficients... |
| estimate.outline.reconstruction | Estimate the outline reconstruction based on Fourier/wavelet... |
| FISH | An example data file |
| generateShapeCoefficients | Get wavelet/Fourier coefficients and basic shape variables |
| getFourier | Get Fourier coefficients, filtered according to filter |
| getMasterlist | Get filtered master.list values |
| getMeasurements | Get simple shape variables, filtered according to filter |
| getStdFourier | Get standardized Fourier coefficients, filtered according to... |
| getStdMeasurements | Get simple shape variables after standardization, filtered... |
| getStdWavelet | Get standardized wavelet coefficients, filtered according to... |
| getWavelet | Get wavelet coefficients, filtered according to filter |
| outline.reconstruction.plot | Plot outline reconstruction |
| plotFourier | Mean and standard deviation of the Fourier coefficients |
| plotFourierShape | Mean otolith shape based on Fourier reconstruction |
| plotWavelet | Mean and standard deviation of the wavelet coefficients |
| plotWaveletShape | Mean otolith shape based on wavelet reconstruction |
| read.master.list | Read updated master list |
| remove.outline | Remove otolith outline |
| setFilter | Set a filter to analyze the shape data |
| shape | An example shapeR instance including 160 images. |
| shapeR | shapeR |
| show | Show a shapeR object |
| show.original.with.outline | Show the extracted outline on top of the original image |
| smoothout | Contour smoothing |
| stdCoefs | Standardize coefficients |
| write.image.with.outline | Write outlines on top of the original images for quality... |
