enrich.master.list: Link information in the info.file to the coefficients...

In shapeR: Collection and Analysis of Otolith Shape Data

Link information in the info.file to the coefficients obtained from the otolith images

Description

Link the original info file to the otolith coefficients

Usage

enrich.master.list(object, folder_name = "folder", pic_name = "picname",
                   calibration = "cal", include.wavelet = TRUE, include.fourier = TRUE,
                   n.wavelet.levels = 5, n.fourier.freq = 12,...)

Arguments

object	A shapeR object
folder_name	Should contain the first letters of the area and the serie or station number of the sample, for example: "IC"
pic_name	Should contain the serie number of a given sample and fish number, for example "403_2" (not including the .jpg extension)
calibration	The name of the column where the pixels to measurement calibration is located
include.wavelet	If TRUE, the wavelet coefficient are included in the master.list
include.fourier	If TRUE then the Normalized Elliptic Fourier coefficients are included in the master.list
n.wavelet.levels	Integer saying how many levels of wavelet levels should be included
n.fourier.freq	Integer saying how many Fourier frequency levels should be included
...	Additional parameter for read.csv for reading the info.file

Value

A shapeR object with values in slots:

• wavelet.coef

• fourier.coef

• shape

• filter

• master.list

Author(s)

Lisa Anne Libungan

Examples

data(shape)
shape = generateShapeCoefficients(shape)

shape = enrich.master.list(shape)

shapeR documentation built on Nov. 22, 2022, 1:07 a.m.